Gene detail

Detail information of GWHGAAZE014373

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDO72594.1	1.20666E-43	hypothetical protein CISIN_1g028383mg [Citrus sinensis]
Swissprot	tr\|Q93Z27\|CML45_ARATH	2E-35	Probable calcium-binding protein CML45
trEMBL	tr\|A0A067FYX9\|A0A067FYX9_CITSI	5E-44	Uncharacterized protein {ECO:0000313\|EMBL:KDO72594.1}
TAIR10	AT5G39670.1	3E-29	Calcium-binding EF-hand family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	11117334	11117657	-
GWHAAZE00000004	mRNA	11117334	11117657	-
GWHAAZE00000004	exon	11117334	11117657	-
GWHAAZE00000004	CDS	11117334	11117657	-

Transcript Sequence
>GWHTAAZE014387 ATGGTGATGGAAAGATTGGGAGCTTTTTGCCATCCTGAAGGGGAAAAACTACAGGGGAGGCTGGGTTTTGATGATCTTTCTAAGCTTTTTGAAGAGAAAGAGCCTAGCTTTGATGAGGTGAAAGGTGCTTTTGATGTATTTGACCAAAACAGAGATGGGTTTATTGATGAAATTGAGTTGCAGAGAGTGCTCTGTTCTTTGGGGCTGAAGAATGGAACAGAGGTGGAGAGCTGTAAGAGGATGATCAATGTGTTTGATGAGAATGGAGATGGGAGGATTGATTTTAATGAGTTTGTCAAATTAATGGAGAGCAGCTTTGGCTGA

Network for GWHGAAZE014373

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13499.7	EF-hand_7	38	103	1.30E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02183	CALM	Ras signaling pathway	map04014
		Rap1 signaling pathway	map04015
		MAPK signaling pathway - plant	map04016
		Apelin signaling pathway	map04371
		Calcium signaling pathway	map04020
		Phosphatidylinositol signaling system	map04070
		cAMP signaling pathway	map04024
		cGMP-PKG signaling pathway	map04022
		Oocyte meiosis	map04114
		Cellular senescence	map04218
		C-type lectin receptor signaling pathway	map04625
		Insulin signaling pathway	map04910
		Glucagon signaling pathway	map04922
		GnRH signaling pathway	map04912
		Estrogen signaling pathway	map04915
		Oxytocin signaling pathway	map04921
		Melanogenesis	map04916
		Renin secretion	map04924
		Aldosterone synthesis and secretion	map04925
		Adrenergic signaling in cardiomyocytes	map04261
		Vascular smooth muscle contraction	map04270
		Salivary secretion	map04970
		Gastric acid secretion	map04971
		Dopaminergic synapse	map04728
		Long-term potentiation	map04720
		Neurotrophin signaling pathway	map04722
		Phototransduction	map04744
		Phototransduction - fly	map04745
		Olfactory transduction	map04740
		Inflammatory mediator regulation of TRP channels	map04750
		Circadian entrainment	map04713
		Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0005509	molecular_function	calcium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	49.630
	SRR3591706	second leaf	4.306
	SRR3591707	mature leaf	3.365
	SRR3591708	Shoot apex	10.296
	SRR3591709	Stem	67.920
	SRR3591710	White floral bud	16.983
	SRR3591711	White flower	15.345
	SRR3591712	Green floral bud	33.239
	SRR3591713	Yellow flower	4.879
SRP173429	SRR8316895	Juvenile bud stage	7.043
	SRR8316896	Juvenile bud stage	2.663
	SRR8316897	Juvenile bud stage	9.206
	SRR8316894	Third green stage	3.165
	SRR8316900	Third green stage	22.601
	SRR8316901	Third green stage	23.734
	SRR8316898	Complete white stage	0.032
	SRR8316899	Complete white stage	12.917
	SRR8316903	Complete white stage	0.568
	SRR8316902	Silver flowering stage	7.794
	SRR8316904	Silver flowering stage	1.932
	SRR8316905	Silver flowering stage	0.994
	SRR8316906	Gold flowering stage	6.450
	SRR8316907	Gold flowering stage	2.711
	SRR8316908	Gold flowering stage	5.406
SRP132670	SRR6706286	Control	0.703
	SRR6706287	Light intensity 50%	0.410
	SRR6706288	Light intensity 20%	0.511
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.559
	CNS0095593	Slightly white alabastrum(diploid) 2	18.593
	CNS0095594	Slightly white alabastrum(diploid) 3	21.212
	CNS0095595	Whole white alabastrum(diploid) 2	39.270
	CNS0095596	Whole white alabastrum(diploid) 3	46.496
	CNS0095597	Whole white alabastrum(diploid) 4	45.084
	CNS0095598	Silvery flower (diploied) 1	21.707
	CNS0095599	Silvery flower (diploied) 2	15.113
	CNS0095600	Silvery flower (diploied) 3	10.850
	CNS0095601	Golden flower (diploid) 1	29.741
	CNS0095602	Golden flower (diploid) 2	12.896
	CNS0095603	Golden flower (diploid) 3	11.249
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.884
	CNS0095605	Slightly white alabastrum(tetraploid) 2	26.010
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.687
	CNS0095607	Whole white alabastrum(tetraploid) 1	62.755
	CNS0095608	Whole white alabastrum(tetraploid) 2	74.169
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.085
	CNS0095610	Silvery flower (tetraploid) 1	2.544
	CNS0095611	Silvery flower (tetraploid) 2	0.550
	CNS0095612	Silvery flower (tetraploid) 3	2.079
	CNS0095613	Golden flower (tetraploid) 1	10.430
	CNS0095614	Golden flower (tetraploid) 2	2.093
	CNS0095615	Golden flower (tetraploid) 3	3.761
CRA001975	CRR073297	Stem 1	0.375
	CRR073298	Stem 2	0.972
	CRR073299	Stem 3	0.269
	CRR073300	Leaf 1	7.882
	CRR073301	Leaf 2	4.153
	CRR073302	Leaf 3	0.330
	CRR073303	Juvenile bud 1	4.741
	CRR073304	Juvenile bud 2	3.074
	CRR073305	Juvenile bud 3	3.545
	CRR073306	Third green 1	2.694
	CRR073307	Third green 2	1.844
	CRR073308	Third green 3	2.224
	CRR073309	Second white 1	0.742
	CRR073310	Second white 2	0.102
	CRR073311	Second white 3	0.805
	CRR073312	Silver flowering 1	0.823
	CRR073313	Silver flowering 2	3.852
	CRR073314	Silver flowering 3	1.522
	CRR073315	Gold flowering 1	4.050
	CRR073316	Gold flowering 2	2.760
	CRR073317	Gold flowering 3	3.296
	CRR073318	Tawny withering 1	3.957
	CRR073319	Tawny withering 2	17.826
	CRR073320	Tawny withering 3	6.337