Gene detail

Detail information of GWHGAAZE014380

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP02253.1	7.679E-174	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q8GWP0\|MYB39_ARATH	5E-66	Transcription factor MYB39
trEMBL	tr\|A0A068U3S8\|A0A068U3S8_COFCA	3E-174	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02253.1}
TAIR10	AT3G01140.1	2E-94	myb domain protein 106

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	11245177	11247150	+
GWHAAZE00000004	mRNA	11245177	11247150	+
GWHAAZE00000004	exon	11245177	11245309	+
GWHAAZE00000004	exon	11245480	11245609	+
GWHAAZE00000004	exon	11246340	11247150	+
GWHAAZE00000004	CDS	11245177	11245309	+
GWHAAZE00000004	CDS	11245480	11245609	+
GWHAAZE00000004	CDS	11246340	11247150	+

Transcript Sequence
>GWHTAAZE014394 ATGGGGAGATCTCCATGCTGTGACAAAGTGGGCTTAAAGAAAGGGCCATGGACCCCTGAAGAAGATCACAAACTCTTAGCCTACATCGAAGAACACGGCCATGGCAGCTGGCGCGCCTTGCCCTCTAGAGCTGGTCTTCAAAGATGTGGAAAGAGTTGTAGACTGAGGTGGACTAATTACCTTAGACCTGATATTAAGAGAGGAAAGTTTAGTTTGCAAGAAGAACAAACCATCATTCAACTCCATGCTCTCTTAGGCAACAGGTGGTCGGCTATAGCCACTCACTTGCCCAAAAGAACAGACAATGAGATCAAGAACTACTGGAATACGCATCTTAAAAAAAGACTGGCCAAAATGGGGATTGACCCTCTTACCCACAAGCCCAAAAACGATGCTATCTTGTCATCGAGCAACGATGGTCAATCCAAGAATTCAGCAAACCTTAGCCACATGGCTCAGTGGGAAAGTGCCCGCCTCGAAGCCGAAGCAAGGTTGGTTAGGCAATCAAAGCTACGCGGTGGTTCAAATCCGCTCCCCCACCAGCTCGGCTCGCCAGAGTTTGCGCCCCCACTATGCCTCGACATACTAAAATCTTGGAATGGTTCGTGGAGTAATCCACCTGAAGCTAGGGGTAGAGGTGGTGGTCCGGTGGCACTGATTGGTGTTGACCTAGAGTCACCCACCTCTACCCTTAGCTACTCAGACAATGGGCCGCCAATCACTGCCACCAGGATGGGAGAAAGCTCCACGAATTTTATTGACTTCGTTAGCAATTCAGGTTCGTGCGAAGATGGGATGATGAAAGAAGAAGGTGAAGGAGATTGGAAGGGACTTGAAAAATACAATGACGAGCATGTTCCTAGTGGGAATTTTGTCGAGACGTTCACAGACCTTTTACTAAATAAATCTGGTGACCGGAGTTTCTCTGAGGATGGTGGAGAATCAGATGTTGGTGACGGCAGTGGACCCAGTATTGGCGGCGGCGGTGGTGATTACTACGAAGATAACAAGAATTACTGGAATAGCATTCTTAATTTGGTGAGTTCTTCACCTTCTGATTCGCCCGTGTTCTAA

Network for GWHGAAZE014380

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0091

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	14	61	1.00E-15
PF00249.32	Myb_DNA-binding	67	112	4.30E-15

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.764
	SRR3591706	second leaf	58.924
	SRR3591707	mature leaf	26.259
	SRR3591708	Shoot apex	52.656
	SRR3591709	Stem	4.877
	SRR3591710	White floral bud	6.714
	SRR3591711	White flower	3.167
	SRR3591712	Green floral bud	17.664
	SRR3591713	Yellow flower	0.183
SRP173429	SRR8316895	Juvenile bud stage	13.244
	SRR8316896	Juvenile bud stage	23.441
	SRR8316897	Juvenile bud stage	8.894
	SRR8316894	Third green stage	7.013
	SRR8316900	Third green stage	10.704
	SRR8316901	Third green stage	16.953
	SRR8316898	Complete white stage	0.209
	SRR8316899	Complete white stage	5.770
	SRR8316903	Complete white stage	1.030
	SRR8316902	Silver flowering stage	0.139
	SRR8316904	Silver flowering stage	0.179
	SRR8316905	Silver flowering stage	0.126
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.198
	SRR8316908	Gold flowering stage	0.094
SRP132670	SRR6706286	Control	14.477
	SRR6706287	Light intensity 50%	12.835
	SRR6706288	Light intensity 20%	14.977
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.856
	CNS0095593	Slightly white alabastrum(diploid) 2	7.074
	CNS0095594	Slightly white alabastrum(diploid) 3	15.840
	CNS0095595	Whole white alabastrum(diploid) 2	5.408
	CNS0095596	Whole white alabastrum(diploid) 3	4.686
	CNS0095597	Whole white alabastrum(diploid) 4	5.339
	CNS0095598	Silvery flower (diploied) 1	7.048
	CNS0095599	Silvery flower (diploied) 2	5.669
	CNS0095600	Silvery flower (diploied) 3	2.661
	CNS0095601	Golden flower (diploid) 1	5.876
	CNS0095602	Golden flower (diploid) 2	3.365
	CNS0095603	Golden flower (diploid) 3	3.730
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.233
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.857
	CNS0095606	Slightly white alabastrum(tetraploid) 3	54.930
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.744
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.255
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.908
	CNS0095610	Silvery flower (tetraploid) 1	3.309
	CNS0095611	Silvery flower (tetraploid) 2	2.475
	CNS0095612	Silvery flower (tetraploid) 3	1.239
	CNS0095613	Golden flower (tetraploid) 1	0.802
	CNS0095614	Golden flower (tetraploid) 2	0.948
	CNS0095615	Golden flower (tetraploid) 3	0.976
CRA001975	CRR073297	Stem 1	17.085
	CRR073298	Stem 2	19.832
	CRR073299	Stem 3	24.114
	CRR073300	Leaf 1	10.915
	CRR073301	Leaf 2	13.766
	CRR073302	Leaf 3	17.818
	CRR073303	Juvenile bud 1	4.260
	CRR073304	Juvenile bud 2	6.767
	CRR073305	Juvenile bud 3	8.235
	CRR073306	Third green 1	0.134
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.151
	CRR073309	Second white 1	0.102
	CRR073310	Second white 2	0.042
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	13.911
	CRR073316	Gold flowering 2	13.321
	CRR073317	Gold flowering 3	19.160
	CRR073318	Tawny withering 1	3.215
	CRR073319	Tawny withering 2	1.765
	CRR073320	Tawny withering 3	2.539