Detail information of GWHGAAZE014395


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011098677.10PREDICTED: probable serine/threonine-protein kinase At1g54610 [Sesamum indicum]
Swissprottr|Q9ZVM9|Y1461_ARATH7E-176Probable serine/threonine-protein kinase At1g54610
trEMBLtr|A0A068U1U8|A0A068U1U8_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313|EMBL:CDP02267.1}
TAIR10AT1G18670.13E-166Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene1143763511441291-
GWHAAZE00000004mRNA1143763511441291-
GWHAAZE00000004exon1143763511437782-
GWHAAZE00000004exon1143785511438000-
GWHAAZE00000004exon1143838811438867-
GWHAAZE00000004exon1143896211439070-
GWHAAZE00000004exon1143919011439287-
GWHAAZE00000004exon1143951511439742-
GWHAAZE00000004exon1143984811440165-
GWHAAZE00000004exon1144026011440544-
GWHAAZE00000004exon1144082411441291-
GWHAAZE00000004CDS1144082411441291-
GWHAAZE00000004CDS1144026011440544-
GWHAAZE00000004CDS1143984811440165-
GWHAAZE00000004CDS1143951511439742-
GWHAAZE00000004CDS1143919011439287-
GWHAAZE00000004CDS1143896211439070-
GWHAAZE00000004CDS1143838811438867-
GWHAAZE00000004CDS1143785511438000-
GWHAAZE00000004CDS1143763511437782-
Transcript Sequence

Network for GWHGAAZE014395

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00069.26Pkinase1514358.30E-69
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyCMGC_CDK-CRK7-CDK9

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf37.137
SRR3591706second leaf1.932
SRR3591707mature leaf0.467
SRR3591708Shoot apex7.953
SRR3591709Stem35.582
SRR3591710White floral bud329.268
SRR3591711White flower18.458
SRR3591712Green floral bud259.802
SRR3591713Yellow flower10.320
SRP173429 SRR8316895Juvenile bud stage 1.633
SRR8316896Juvenile bud stage 18.461
SRR8316897Juvenile bud stage 10.451
SRR8316894Third green stage 13.911
SRR8316900Third green stage 100.468
SRR8316901Third green stage 94.864
SRR8316898Complete white stage 0.139
SRR8316899Complete white stage 2.303
SRR8316903Complete white stage 0.877
SRR8316902Silver flowering stage2.490
SRR8316904Silver flowering stage7.619
SRR8316905Silver flowering stage2.203
SRR8316906Gold flowering stage 3.561
SRR8316907Gold flowering stage 3.409
SRR8316908Gold flowering stage 2.548
SRP132670SRR6706286Control49.335
SRR6706287Light intensity 50%54.966
SRR6706288Light intensity 20%48.301
CNP0000432CNS0095592Slightly white alabastrum(diploid) 169.026
CNS0095593Slightly white alabastrum(diploid) 258.688
CNS0095594Slightly white alabastrum(diploid) 372.792
CNS0095595Whole white alabastrum(diploid) 2214.141
CNS0095596Whole white alabastrum(diploid) 3246.462
CNS0095597Whole white alabastrum(diploid) 4297.943
CNS0095598Silvery flower (diploied) 19.924
CNS0095599Silvery flower (diploied) 238.004
CNS0095600Silvery flower (diploied) 38.760
CNS0095601Golden flower (diploid) 112.282
CNS0095602Golden flower (diploid) 28.216
CNS0095603Golden flower (diploid) 38.150
CNS0095604Slightly white alabastrum(tetraploid) 1157.106
CNS0095605Slightly white alabastrum(tetraploid) 2170.636
CNS0095606Slightly white alabastrum(tetraploid) 31.532
CNS0095607Whole white alabastrum(tetraploid) 1340.788
CNS0095608Whole white alabastrum(tetraploid) 2394.854
CNS0095609Whole white alabastrum(tetraploid) 3170.452
CNS0095610Silvery flower (tetraploid) 16.048
CNS0095611Silvery flower (tetraploid) 226.312
CNS0095612Silvery flower (tetraploid) 362.105
CNS0095613Golden flower (tetraploid) 17.720
CNS0095614Golden flower (tetraploid) 22.741
CNS0095615Golden flower (tetraploid) 327.505
CRA001975CRR073297Stem 117.617
CRR073298Stem 216.374
CRR073299Stem 37.627
CRR073300Leaf 1116.226
CRR073301Leaf 269.183
CRR073302Leaf 330.604
CRR073303Juvenile bud 190.053
CRR073304Juvenile bud 260.612
CRR073305Juvenile bud 311.330
CRR073306Third green 148.882
CRR073307Third green 239.918
CRR073308Third green 342.068
CRR073309Second white 12.745
CRR073310Second white 212.549
CRR073311Second white 312.655
CRR073312Silver flowering 149.502
CRR073313Silver flowering 260.121
CRR073314Silver flowering 324.364
CRR073315Gold flowering 123.581
CRR073316Gold flowering 210.781
CRR073317Gold flowering 34.396
CRR073318Tawny withering 155.988
CRR073319Tawny withering 252.889
CRR073320Tawny withering 351.492