Gene detail

Detail information of GWHGAAZE014398

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009768497.1	2.4706E-155	PREDICTED: chorismate mutase 1, chloroplastic [Nicotiana sylvestris]
Swissprot	tr\|P42738\|CM1_ARATH	1E-137	Chorismate mutase 1, chloroplastic (Precursor)
trEMBL	tr\|D2CSU4\|D2CSU4_PETHY	4E-153	Chorismate mutase 1 {ECO:0000313\|EMBL:ACI41889.1}
TAIR10	AT3G29200.1	3E-101	chorismate mutase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	11477771	11481196	-
GWHAAZE00000004	mRNA	11477771	11481196	-
GWHAAZE00000004	exon	11477771	11478007	-
GWHAAZE00000004	exon	11478106	11478198	-
GWHAAZE00000004	exon	11478877	11479020	-
GWHAAZE00000004	exon	11479144	11479230	-
GWHAAZE00000004	exon	11479307	11479529	-
GWHAAZE00000004	exon	11481021	11481196	-
GWHAAZE00000004	CDS	11481021	11481196	-
GWHAAZE00000004	CDS	11479307	11479529	-
GWHAAZE00000004	CDS	11479144	11479230	-
GWHAAZE00000004	CDS	11478877	11479020	-
GWHAAZE00000004	CDS	11478106	11478198	-
GWHAAZE00000004	CDS	11477771	11478007	-

Transcript Sequence
>GWHTAAZE014412 ATGGAGAGCAAGCTGCTGTTAAGAGCTCCTTCCGTTTCAATCCCTTGGTTTCCTAAGCATCCAAAATCCAATCCTGTTCTCACCGACCCCCGCTGGGGAACTTTTTCCTATACGCTCAGTTCGAGAGTCTCAACGCTCGGCATTCACACTGTTCAAGCCTCTGCAACTCCGATCGGATTGGCAAAGAAAGACAGGATAGATGAGACTGAGTTCTATACCCTAGACGGCATAAGGAGTTCTTTAATTCGGCAAGAGGATAGTATAATCTTTAGCCTTGTGGAAAGAGCTCAATACTGTTATAATGCAGATACATACGATCCCAATGCTTCCTTCATGGATGGTGTACAAGGTTCTTTGATTGAATTTATGGTTAAAGAAACTGAAAAGCTTCACGCTAAGGTTGGGAGGTACAAGAGCCCTGATGAACATTCTTTCTTCCCGGATGACCTACCTGAACCGATGCTTCCACCTCTACAATACCCACAGGTTCTGCATCCCATAGCTGAATCAATCAATATCAACACAAAAGTATGGGATATGTATTTCAGCAAGCTTCTTCCAATATTGGTTAAGGAAGGTGACGATGGCAATTATGGGTCCACCGCAACTTGCGACACCATTTGCTTGCAGGCCCTCTCAAAAAGAATTCACTTTGGTAAATTTGTCGCAGAAGCTAAGTTCTTGGCCTCACCTAAAGACTATGAATCTGCCATAAGAGCACAAGATGGCGGCAAACTGATGGATTTGCTGACATACCCGAAGGTGGAACAGACAGTAAAAGAGAGAGTGGATATGAAAACTAGAACTTATGCGCAAGAGGTTGAGTTGAAGGAAAATGGGGATGCAGGTGACCCAGTATACAAAATAAAACCAAATTTGGTTGCTGATCTTTATGAAAAGTGGATCATGCCACTGACAAAGGAAGTTCAAGTTCAATATTTGTTGAGGAGACTTGATTGA

Network for GWHGAAZE014398

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01850	E5.4.99.5	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Phenylalanine, tyrosine and tryptophan biosynthesis	map00400

Gene Ontology

GO term	Ontology	Name
GO:0009073	biological_process	aromatic amino acid family biosynthetic process
GO:0046417	biological_process	chorismate metabolic process
GO:0004106	molecular_function	chorismate mutase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	55.246
	SRR3591706	second leaf	32.133
	SRR3591707	mature leaf	17.314
	SRR3591708	Shoot apex	35.706
	SRR3591709	Stem	139.613
	SRR3591710	White floral bud	46.870
	SRR3591711	White flower	36.296
	SRR3591712	Green floral bud	34.828
	SRR3591713	Yellow flower	30.063
SRP173429	SRR8316895	Juvenile bud stage	28.092
	SRR8316896	Juvenile bud stage	31.126
	SRR8316897	Juvenile bud stage	11.281
	SRR8316894	Third green stage	12.596
	SRR8316900	Third green stage	44.614
	SRR8316901	Third green stage	38.032
	SRR8316898	Complete white stage	16.929
	SRR8316899	Complete white stage	35.627
	SRR8316903	Complete white stage	27.179
	SRR8316902	Silver flowering stage	10.558
	SRR8316904	Silver flowering stage	16.462
	SRR8316905	Silver flowering stage	9.932
	SRR8316906	Gold flowering stage	42.367
	SRR8316907	Gold flowering stage	34.801
	SRR8316908	Gold flowering stage	49.423
SRP132670	SRR6706286	Control	30.671
	SRR6706287	Light intensity 50%	34.242
	SRR6706288	Light intensity 20%	37.120
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.202
	CNS0095593	Slightly white alabastrum(diploid) 2	19.461
	CNS0095594	Slightly white alabastrum(diploid) 3	19.900
	CNS0095595	Whole white alabastrum(diploid) 2	19.781
	CNS0095596	Whole white alabastrum(diploid) 3	16.667
	CNS0095597	Whole white alabastrum(diploid) 4	15.654
	CNS0095598	Silvery flower (diploied) 1	19.891
	CNS0095599	Silvery flower (diploied) 2	20.889
	CNS0095600	Silvery flower (diploied) 3	16.818
	CNS0095601	Golden flower (diploid) 1	18.343
	CNS0095602	Golden flower (diploid) 2	17.007
	CNS0095603	Golden flower (diploid) 3	16.396
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.603
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.193
	CNS0095606	Slightly white alabastrum(tetraploid) 3	36.168
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.207
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.214
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.550
	CNS0095610	Silvery flower (tetraploid) 1	14.622
	CNS0095611	Silvery flower (tetraploid) 2	12.277
	CNS0095612	Silvery flower (tetraploid) 3	19.705
	CNS0095613	Golden flower (tetraploid) 1	19.756
	CNS0095614	Golden flower (tetraploid) 2	27.027
	CNS0095615	Golden flower (tetraploid) 3	13.082
CRA001975	CRR073297	Stem 1	37.950
	CRR073298	Stem 2	34.059
	CRR073299	Stem 3	33.198
	CRR073300	Leaf 1	30.230
	CRR073301	Leaf 2	26.820
	CRR073302	Leaf 3	29.396
	CRR073303	Juvenile bud 1	22.449
	CRR073304	Juvenile bud 2	17.316
	CRR073305	Juvenile bud 3	20.605
	CRR073306	Third green 1	49.366
	CRR073307	Third green 2	31.096
	CRR073308	Third green 3	36.161
	CRR073309	Second white 1	45.312
	CRR073310	Second white 2	54.734
	CRR073311	Second white 3	56.452
	CRR073312	Silver flowering 1	74.176
	CRR073313	Silver flowering 2	71.004
	CRR073314	Silver flowering 3	73.149
	CRR073315	Gold flowering 1	5.147
	CRR073316	Gold flowering 2	5.791
	CRR073317	Gold flowering 3	6.961
	CRR073318	Tawny withering 1	35.591
	CRR073319	Tawny withering 2	30.337
	CRR073320	Tawny withering 3	43.718