Gene detail

Detail information of GWHGAAZE014411

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009589735.1	PREDICTED: cyclic nucleotide-gated ion channel 2 [Nicotiana tomentosiformis]
Swissprot	tr\|O65718\|CNGC2_ARATH	Cyclic nucleotide-gated ion channel 2
trEMBL	tr\|U5FP62\|U5FP62_POPTR	Uncharacterized protein {ECO:0000313\|EMBL:ERP51142.1}
TAIR10	AT5G15410.2	Cyclic nucleotide-regulated ion channel family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	11562232	11567795	-
GWHAAZE00000004	mRNA	11562232	11567795	-
GWHAAZE00000004	exon	11562232	11562963	-
GWHAAZE00000004	exon	11564017	11564083	-
GWHAAZE00000004	exon	11564222	11564664	-
GWHAAZE00000004	exon	11564782	11564871	-
GWHAAZE00000004	exon	11565292	11565528	-
GWHAAZE00000004	exon	11565773	11565884	-
GWHAAZE00000004	exon	11566122	11566420	-
GWHAAZE00000004	exon	11566700	11566801	-
GWHAAZE00000004	exon	11567178	11567795	-
GWHAAZE00000004	CDS	11567178	11567795	-
GWHAAZE00000004	CDS	11566700	11566801	-
GWHAAZE00000004	CDS	11566122	11566420	-
GWHAAZE00000004	CDS	11565773	11565884	-
GWHAAZE00000004	CDS	11565292	11565528	-
GWHAAZE00000004	CDS	11564782	11564871	-
GWHAAZE00000004	CDS	11564222	11564664	-
GWHAAZE00000004	CDS	11564017	11564083	-
GWHAAZE00000004	CDS	11562232	11562963	-

Transcript Sequence
>GWHTAAZE014425 ATGTTAACTCTTCTCACTCTATTCCGACGTTGGAACACTCACCAACTCTGCAACAGCGACGACGAAAATCCATCAGTCGAATGTTATGCTTGCACTCAAGCAGGCTTCCCAGTTTTCCACTCCACTAGTTGCGACCGGGCCCACCAACCCCAATGGGAGGCCTCCGCCGGAACTTCACTAGTCCCAATCCACTACAAGCATACCCGCCAAACCCCTAACACTCGCTCCAGTACTTCTACGGGGGGGCCGTTTGGCAGTGTACTCGATCCTCGTAGCAAGCGCGTGCAGAGGTGGAACCGTGCTTTCGTTCTGGCACGAGGCATGGCCATGGCCGTTGATCCTCTCTTCTTCTACGTCCTGTCTATCGGCCGTGGCGGCTCACCATGCCTATACTTCAACGCACAGTTGGCTGTTATTGTGACGGTTCTTCGTACGTGCTTGGACGCGGTGCACCTGTGCCACATGTGCCTTCAGTTTCGCTTGGCATTTGTTTCGAGGGAGTCGTTGGTGGTGGGGTGCGGGAAGCTCGTCTGGGATGCACGTGCCATCTCGTCTCACTACGTGCGATCTGTTAAGGGGTTCTGGTTCGATGCGTTTGTGATTCTCCCAATTCCTCAGGCTGTAATTTTGTTAGTAGTACCAAGATTGATGAGAGAGGAGGAGGTAATGCTGATAATGTCAATACTTGAACTCATCTTCCTCTTCCAGTTTCTCCCAAAGGTACTTGGAGGATGCTGGTATGTACTCGCAATACAAAGAGTAGCTTCGTGTCTCCGGCAGCAGTGTGAACACAAAAATACATGTAACCTCTCTATGTCGAGCTCGGAGGAGGTCTATCATCAGTTTATTTTGCCGGCACATACGTTAGTGAATCCGTGCAGCGGTAACACATCATTGTGTTTAGATATTAATGGACCATTCCACTATGGTATTTACAAATGGGCTCTACCAGTAATCTCTAGCAACTCCATTGCTGTCAAGATTTTTTATCCCTTCTTTTGGGGGTTGTATACCCTCAGTACTTTTGGTAACAACCTCGAGCCCACAAGCCACTGGCTTGAAGTGATCTTCATCATATGTACTGTGCTCAGTGGTTTAATGCTCTTCACTTTGCTGATAGGCAATATTCAGGTATTCTTGCTTGCTGTCATGGCAAAGAAGAGAAAGATGCAACTAAGATGCAGAGACATGGAGTGGTGGATGAAGAGGAGACAATTGCCCTCTCAACTTAGACAAAGAGTTCGTCACTATGAACGTCATCAATGGGCGGCCATGGGTGGACAAGACGAAATTGAACTCATTAAAGACTTGCCTGAAGGCCTTCGAAGAGACATTAAGCGATTCCTTTGCCTAGACCTCGTTAAAAAGGTACCTCTTTTCCACAGTCTAGATGACGATCTCATTCTAGACAACATTTGTGATCGCGTCAAGCCCCTCGTCTTCGCTAGTAACGAAAAGATAATAAGAGAAGGAGACCCGGTACAACGAATAGTATTCATAGTTCGAGGATGCATAAAGAGAAGCCAAAGCTTCAGTAAAGGCATGGTAGCCACAAGCGTACTAGAACCAGGAGGATTTTTGGGGGACGAGCTTCTCTCATGGTGCCTTCGTCGTCCATTTATAGACCGGCTTCCGTCCTCTTCAGCGACATTTACTAGTCTCGAACCGACAGAGGCATTTGGTCTCGATGCAAATAATCTCCGATACATCACTGAACATTTCCGTTACAAATTTGCAAGCGAGAGGCTAAAGAGGACAACGAGGTATTACTCGTCGTATTGGAGGACTTGGGCAGCTATAAATATACAGTTAGCTTGGCGGCGTTATATGGTGAGGACTAGGTGGCCAGTGGAAAATGGGGGTGGTGGGGATCGGTTAAGGCAGTATGCTGCAATGTTCATTGCCTCTTTGGCTCTTTGTATCAAGAACTACGCTGTGTTGATCCTGCTTTGGTTTACTCTTCTTGGGGTATACGGCAACATTCCTACCCGCGGCGCAATTCTCACTCCGATAACAACATCGCCGACACTGAACCAATCGAATGCTACGCTTGTACTCAAGTTGGCATTCCCATTTTCCACTCCACCACCTGCGACTCGGCCCATCCCCCCCAATTGGGAGGCTCTGGCTGGTTCTTCTCTATTCCCCACCCAAACCGCCATGACCCGGTCCACAAGTGACCCGTTTTCTCTATTCGGGCTAGTTCTGGACCCGCGTAGCCAAAGCATACAGTGCTGGAACAGGGTTATTCTGCTGACACGTGGCCTGGCACTGGCCGTCGATCCTCTCTTCGTCTCCGCCATGTCAATAAATATCAGCGGCCGAAACAAGGCGTGCATTCATATGGGGATTGACGTGGCGGCGATGGTGAGCGCACTTCGCACGTGCTTGGATGCGGTGCAGTTGTGCCACGTGTGGCTTCAGTTTCGGTTGGGGTACGCGCCTAGGGAGTCGTTGGTGGTGGGGTGCGGGAAACTCACGTGGGACGCACGTGCGATCGCCACACACTACGTCAAGTCTCTCAGGATTTTGTGGTTTGACGTCTTCGATTTTGCTGCCGATTCCTCAGGTGAGCAAATCTTTAACTTTCCAAATATTTTTTTTTTATTTATTTATTTATATATGCATATGCATGCTAGTACAACCAAAAAGTGCGGACAGCTTTTGCATGGTAAGGTGACAACTATATGTTTATGTTGA

Network for GWHGAAZE014411

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0278

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00520.32	Ion_trans	98	377	4.80E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05391	CNGC	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006811	biological_process	ion transport
GO:0055085	biological_process	transmembrane transport
GO:0016020	cellular_component	membrane
GO:0005216	molecular_function	ion channel activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.347
	SRR3591706	second leaf	3.706
	SRR3591707	mature leaf	1.816
	SRR3591708	Shoot apex	1.586
	SRR3591709	Stem	8.863
	SRR3591710	White floral bud	1.223
	SRR3591711	White flower	3.060
	SRR3591712	Green floral bud	0.119
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.783
	SRR8316896	Juvenile bud stage	0.133
	SRR8316897	Juvenile bud stage	0.067
	SRR8316894	Third green stage	0.401
	SRR8316900	Third green stage	0.063
	SRR8316901	Third green stage	0.131
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.592
	SRR8316903	Complete white stage	1.254
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.349
	SRR6706287	Light intensity 50%	0.504
	SRR6706288	Light intensity 20%	0.469
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.446
	CNS0095593	Slightly white alabastrum(diploid) 2	0.259
	CNS0095594	Slightly white alabastrum(diploid) 3	0.595
	CNS0095595	Whole white alabastrum(diploid) 2	0.799
	CNS0095596	Whole white alabastrum(diploid) 3	0.093
	CNS0095597	Whole white alabastrum(diploid) 4	0.909
	CNS0095598	Silvery flower (diploied) 1	5.105
	CNS0095599	Silvery flower (diploied) 2	3.316
	CNS0095600	Silvery flower (diploied) 3	0.894
	CNS0095601	Golden flower (diploid) 1	1.210
	CNS0095602	Golden flower (diploid) 2	1.324
	CNS0095603	Golden flower (diploid) 3	1.411
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.944
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.338
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.329
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.384
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.167
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.079
	CNS0095610	Silvery flower (tetraploid) 1	0.016
	CNS0095611	Silvery flower (tetraploid) 2	2.552
	CNS0095612	Silvery flower (tetraploid) 3	0.276
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.001
	CNS0095615	Golden flower (tetraploid) 3	0.064
CRA001975	CRR073297	Stem 1	0.157
	CRR073298	Stem 2	0.152
	CRR073299	Stem 3	0.038
	CRR073300	Leaf 1	0.021
	CRR073301	Leaf 2	0.223
	CRR073302	Leaf 3	0.050
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.019
	CRR073308	Third green 3	0.052
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.001
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.744
	CRR073316	Gold flowering 2	1.179
	CRR073317	Gold flowering 3	1.205
	CRR073318	Tawny withering 1	0.112
	CRR073319	Tawny withering 2	0.446
	CRR073320	Tawny withering 3	0.100