Gene detail

Detail information of GWHGAAZE014412

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009589735.1	PREDICTED: cyclic nucleotide-gated ion channel 2 [Nicotiana tomentosiformis]
Swissprot	tr\|O65718\|CNGC2_ARATH	Cyclic nucleotide-gated ion channel 2
trEMBL	tr\|U5FP62\|U5FP62_POPTR	Uncharacterized protein {ECO:0000313\|EMBL:ERP51142.1}
TAIR10	AT5G15410.2	Cyclic nucleotide-regulated ion channel family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	11573344	11578545	-
GWHAAZE00000004	mRNA	11573344	11578545	-
GWHAAZE00000004	exon	11578164	11578545	-
GWHAAZE00000004	exon	11577462	11578065	-
GWHAAZE00000004	exon	11575458	11575673	-
GWHAAZE00000004	exon	11575039	11575355	-
GWHAAZE00000004	exon	11574704	11574815	-
GWHAAZE00000004	exon	11574329	11574565	-
GWHAAZE00000004	exon	11574138	11574224	-
GWHAAZE00000004	exon	11573344	11573835	-
GWHAAZE00000004	five_prime_UTR	11578202	11578545	-
GWHAAZE00000004	CDS	11578164	11578201	-
GWHAAZE00000004	CDS	11577462	11578065	-
GWHAAZE00000004	CDS	11575458	11575673	-
GWHAAZE00000004	CDS	11575039	11575355	-
GWHAAZE00000004	CDS	11574704	11574815	-
GWHAAZE00000004	CDS	11574329	11574565	-
GWHAAZE00000004	CDS	11574138	11574224	-
GWHAAZE00000004	CDS	11573344	11573835	-

Transcript Sequence
>GWHTAAZE014426 TAAACTATATGTTATTTCTTCTTCATTTTTTTTAACTATATGTTATTATCCGAACTAGCTTTTGTACATTTCTACTAATCTCTACGTGTACGTGAGCACAAACCACTATCCTGTGAGGCATCTTGGTGGTTTGATCACTCTTTCATATAACCCAACCCCACCCCGCCCCGCCCCTTCTCCTCTTCACATGCTCTGTCACTGAAACCATTCATTTATAATATCTCTCTCTCTTTCTCTACATCCTTGACTCCCCTCTTTCCTCACTCATCACTGCCTTTTTCCCAATGAATTAAATCTCCACTCCAATTCTAGCTTTATCTATCGATCATTCTATTCTTCCAACCATGCCCTCTACTCCAGACCTCCACTCCTCCTTCCCAAGCTTGTTTGGAATATTCCGGTGTCCAAAAATCCAGACCGATACCAGTGACGTCATCGAAGATGACAATCCTGTCTCCAACTCCGTGGAATGCTACGCGTGCACGCAGGTGGGAGTGCCTGTCTTTCACTCCACCAGCTGTGACCAGGCGCACCAGCCGGAGTGGGAGGCCTCCGCCGGTTCTTCACTTGTCCCAATAAAAAACCGACCTGCCGGTTACCAGCGGTTATCAGGACCGTTCGGCGGTGTGTTGGACCCGCGGAAGAAGCGCGTGCAGAGGTGGAACCGGGCGTTTTTATTGGTACGTGGCCTGGCGCTGGCCGTTGATCCTCTCTTCTTTTACACCTTATCTATCGGTAGGGGCGGGTCGCCGTGTTTGTACATGGACGGGGGATTGGCGGCAATTGTTACGGTGCTTCGCACCTGCGTGGACGCCGTGCACCTGTGCCATATGTGGCTTCAGTTTCGGCTGGCGTACGTGTCCAGGGAATCGTTGGTGGTTGGATGCGGGAAGCTAGTGTGGGACCCGCATGCCATCGCCTCTCACTACGTTCGATCACTCAAGGGCTTCTGGTTCGATGCTTTGGTCATACTCCCGGTTCCCCAGGCTGTGTTTTGGTTAGTGGTACCAACACTTATAAGAGAAGAGAAGATAAAGCTGATAATGACAATACTTCTACTCATCTTTCTATTTCAGTTCCTCCCTAAGGTCTATCACAGCATTACCCTTTTGAGAAGAATGCAAAAGGTCACAGGCTATGTCTTTGGCACCATTTGGTGGGGTTTCGGCCTTAATCTCATTGCCTACTTCATCGCTTCTCATGTTGCTGGGGGATGCTGGTATGTACTTGCAATACAAAGAGTGGCTTCGTGCCTGAGGCAGCAGTGTGAAAGAAAAAATACGTGTGACCTCTCATTGTCTTGCTCTGAAGAAGTTTGTTACCAGTTTCTTCTGCCTGCAGGCACGATAGGAAACCCTTGTGGTGGTAACTCAACGACGATGCTTAGGAAGCCTTTGTGTCTGGATGTTAATGGACCTTTCCGTTACGGCATCTACAAATGGGCTCTGCCTGTCATTTCTAGCAACTCCGTCTATGTCAAGATTATTTATCCCATTTTTTGGGGTCTGTATACCCTCAGCACTTTTGGCAATGATCTGGAACCCACAAGTCAGTGGTTGGAATTAATCTTCAGCATATGTATTGTGCTCACCGGTCTTATGCTCTTCACTCTGTTGATTGGAAATATTCAGGTATTCTTGCACGCGGTGATGGCAAAGAAGAGAAACATGCAACTGAGATGTCGAGACATGGAATGGTGGATGAAGCGGAGACAATTGCCATCTCCATTGAGGCAAAGAGTTCGTCATTTTGAACGTCAGAGATGGGCCACCATGGGAGGTGAAGACGAGATGGAGTTGGTTAAAGACTTGCCCGAAGGCCTGAGACGAGACATTAAGCGATTTCTCTGCCTAGACCTCATCAAAAAGGTACCTCTGTTCCAAAGTTTGGATGATCTTATCCTAGACAACATCTGTGACAGAGTCAAGCCCCTTGTTTTCTCTAGAGATGAAAAGATAATTAGAGAAGGCGACCCTGTGCCACGGATTGTGTTCCTCGTTCGCGGACTTGTAAAGAGTAGCCAAAATCTAAGTAAAGGGGTGGTGGCGACAAGCACTCTAGAACCAGGAGGCTTTTTGGGTGACGAGCTTCTCTCATGGTGCCTTAGACGCCCATTTACCGACAGATTACCACCCTCTTCAGCGACATTCACGTGTATTGAACCAACAGAGGCATTTGGTCTCGATGCAAACAATCTCCGGTACATAACCGATCACTTCCGTTACAAATTTGCAAACGAGAGGCTAAAGAGGACAGCAAGGTATTACTCATCCAGTTGGAGGACATGGGCAGCTGTGAATATACAGCTGGCTTGGCGGCGGTACCTGGCGAGGGTTAGGCGTCCGTTGATCAATGAGGTAGTGACAGAAAATGGAGGGAGTGCACGTTTGCTCCGGCAATATGCTGCAATGTTCATGTCACTACGGCCACATGACCACCTTGAATAA

Network for GWHGAAZE014412

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00520.32	Ion_trans	106	429	2.80E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05391	CNGC	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006811	biological_process	ion transport
GO:0055085	biological_process	transmembrane transport
GO:0016020	cellular_component	membrane
GO:0005216	molecular_function	ion channel activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	33.674
	SRR3591706	second leaf	31.689
	SRR3591707	mature leaf	26.825
	SRR3591708	Shoot apex	27.443
	SRR3591709	Stem	7.323
	SRR3591710	White floral bud	52.198
	SRR3591711	White flower	28.023
	SRR3591712	Green floral bud	44.084
	SRR3591713	Yellow flower	25.986
SRP173429	SRR8316895	Juvenile bud stage	18.071
	SRR8316896	Juvenile bud stage	21.379
	SRR8316897	Juvenile bud stage	16.428
	SRR8316894	Third green stage	13.658
	SRR8316900	Third green stage	43.291
	SRR8316901	Third green stage	36.906
	SRR8316898	Complete white stage	11.928
	SRR8316899	Complete white stage	43.906
	SRR8316903	Complete white stage	18.369
	SRR8316902	Silver flowering stage	11.751
	SRR8316904	Silver flowering stage	20.575
	SRR8316905	Silver flowering stage	9.564
	SRR8316906	Gold flowering stage	25.305
	SRR8316907	Gold flowering stage	33.222
	SRR8316908	Gold flowering stage	31.154
SRP132670	SRR6706286	Control	47.192
	SRR6706287	Light intensity 50%	45.277
	SRR6706288	Light intensity 20%	52.694
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.267
	CNS0095593	Slightly white alabastrum(diploid) 2	35.241
	CNS0095594	Slightly white alabastrum(diploid) 3	27.953
	CNS0095595	Whole white alabastrum(diploid) 2	29.749
	CNS0095596	Whole white alabastrum(diploid) 3	31.573
	CNS0095597	Whole white alabastrum(diploid) 4	27.911
	CNS0095598	Silvery flower (diploied) 1	66.570
	CNS0095599	Silvery flower (diploied) 2	65.813
	CNS0095600	Silvery flower (diploied) 3	95.976
	CNS0095601	Golden flower (diploid) 1	56.998
	CNS0095602	Golden flower (diploid) 2	115.704
	CNS0095603	Golden flower (diploid) 3	111.430
	CNS0095604	Slightly white alabastrum(tetraploid) 1	43.656
	CNS0095605	Slightly white alabastrum(tetraploid) 2	43.764
	CNS0095606	Slightly white alabastrum(tetraploid) 3	78.743
	CNS0095607	Whole white alabastrum(tetraploid) 1	28.810
	CNS0095608	Whole white alabastrum(tetraploid) 2	26.149
	CNS0095609	Whole white alabastrum(tetraploid) 3	50.629
	CNS0095610	Silvery flower (tetraploid) 1	85.373
	CNS0095611	Silvery flower (tetraploid) 2	122.426
	CNS0095612	Silvery flower (tetraploid) 3	50.892
	CNS0095613	Golden flower (tetraploid) 1	53.886
	CNS0095614	Golden flower (tetraploid) 2	91.797
	CNS0095615	Golden flower (tetraploid) 3	102.541
CRA001975	CRR073297	Stem 1	29.062
	CRR073298	Stem 2	28.262
	CRR073299	Stem 3	30.742
	CRR073300	Leaf 1	32.789
	CRR073301	Leaf 2	34.608
	CRR073302	Leaf 3	30.385
	CRR073303	Juvenile bud 1	31.079
	CRR073304	Juvenile bud 2	16.636
	CRR073305	Juvenile bud 3	45.390
	CRR073306	Third green 1	2.048
	CRR073307	Third green 2	3.385
	CRR073308	Third green 3	4.009
	CRR073309	Second white 1	12.339
	CRR073310	Second white 2	7.971
	CRR073311	Second white 3	6.894
	CRR073312	Silver flowering 1	4.847
	CRR073313	Silver flowering 2	7.915
	CRR073314	Silver flowering 3	5.446
	CRR073315	Gold flowering 1	9.839
	CRR073316	Gold flowering 2	12.574
	CRR073317	Gold flowering 3	14.624
	CRR073318	Tawny withering 1	5.999
	CRR073319	Tawny withering 2	5.493
	CRR073320	Tawny withering 3	8.144