Gene detail

Detail information of GWHGAAZE014422

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010258124.1	PREDICTED: alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic [Nelumbo nucifera]
Swissprot	tr\|P27598\|PHSL_IPOBA	Alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic (Precursor)
trEMBL	tr\|D7SXJ4\|D7SXJ4_VITVI	Alpha-1,4 glucan phosphorylase {ECO:0000256\|RuleBase:RU000587}
TAIR10	AT3G29320.1	Glycosyl transferase, family 35

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	11681504	11688715	+
GWHAAZE00000004	mRNA	11681504	11688715	+
GWHAAZE00000004	exon	11681504	11681735	+
GWHAAZE00000004	exon	11682195	11682433	+
GWHAAZE00000004	exon	11682611	11682712	+
GWHAAZE00000004	exon	11683260	11683436	+
GWHAAZE00000004	exon	11683561	11683836	+
GWHAAZE00000004	exon	11683982	11684253	+
GWHAAZE00000004	exon	11684978	11685095	+
GWHAAZE00000004	exon	11685188	11685670	+
GWHAAZE00000004	exon	11685792	11685944	+
GWHAAZE00000004	exon	11686799	11686927	+
GWHAAZE00000004	exon	11687093	11687329	+
GWHAAZE00000004	exon	11687393	11687526	+
GWHAAZE00000004	exon	11687634	11687853	+
GWHAAZE00000004	exon	11687964	11688164	+
GWHAAZE00000004	exon	11688513	11688715	+
GWHAAZE00000004	CDS	11681504	11681735	+
GWHAAZE00000004	CDS	11682195	11682433	+
GWHAAZE00000004	CDS	11682611	11682712	+
GWHAAZE00000004	CDS	11683260	11683436	+
GWHAAZE00000004	CDS	11683561	11683836	+
GWHAAZE00000004	CDS	11683982	11684253	+
GWHAAZE00000004	CDS	11684978	11685095	+
GWHAAZE00000004	CDS	11685188	11685670	+
GWHAAZE00000004	CDS	11685792	11685944	+
GWHAAZE00000004	CDS	11686799	11686927	+
GWHAAZE00000004	CDS	11687093	11687329	+
GWHAAZE00000004	CDS	11687393	11687526	+
GWHAAZE00000004	CDS	11687634	11687853	+
GWHAAZE00000004	CDS	11687964	11688164	+
GWHAAZE00000004	CDS	11688513	11688629	+
GWHAAZE00000004	three_prime_UTR	11688630	11688715	+

Transcript Sequence
>GWHTAAZE014436 ATGGCTACTTCTTCACCCTTGTCTGGAACTACTTCATCTCGATCAGCCACATTCTCGCATTGCGGAGGTTCAATATCTAGATTGATCCATTTCACCACTAGATACAACAACAACAACATCAGGAGGAGGAAGAGCTCCTCCAACTTCTTCTTCGCCACTCCCTCCGATTTGCGGAGGTCTCTCTCTGTGAAGAACGTTTCTAGTCAGCCGGAGCAAATACTCAAGGACGAAGAGGCTCCAGTTGATCTGGGTTCTTTCACACCCGATTCTGAATCCATTGCCTCAAGTATCAAGTACCACGCAGAGTTCACACCATTGTTTTCCCCTGAGCGGTTTGATCTACCCAAGGCATACTTTGCTACTGCACAAAGTGTCCGAGATGCACTAATCATTCATTGGAATGCAACGTATGACTACTATGAAAAGATGAATGTAAAACAGGCATACTATTTGTCCATGGAATTTCTACAGGGTCGAGCTTTATTAAATGCCATTGGTAATTTAGAGCTAACGGGTGCTTATGGAGAGGCTTTGAGCAAGCTTGGACACAATCTAGAGAATGTGGCTTGGCAGGAGCCAGATGCTGCTCTTGGCAATGGTGGTCTTGGACGGCTTGCGTCCTGCTTTCTGGACTCTTTGGCAACATTAAATTATCCAGCGTGGGGTTATGGCCTCAGATACAAGTATGGTTTATTTAAACAGCTGATTACTAAAGATGGTCAAGAGGAGGTTGCCGAAAATTGGCTTGAAATGGGCAATCCCTGGGAAATCATAAGAAATGATGTCTTGTATCCGATAAAGTTTTATGGCAAGGTTGTTACAGGGTCAGATGGAAAGAAACACTGGATTGGCGGAGAAGATATAAAGGCTGTTGCATATGATGTCCCAATACCAGGATATAAAACTAAAACAACAATCAACCTTCGGCTTTGGTCCACTAAAGTTCCATCAGAAGATCTTGATTTATATGCATTCAATGCTGGAGAACACACTAAAGGAATTGAAGACCAAGTGAATGCGGAAAAGATTTGCTACATACTATACCCTGGGGATGAATCAATGGAGGGAAAGATTCTTAGGTTGAAGCAACAGTATACCTTGTGCTCGGCTTCCCTCCAAGATATTATTGCACGTTTTGAGAGGAGATCCGGTGGGCATGTTAATTGGGAAGAATTTCCTGAAAAAGTTGCAGTGCAGATGAATGATACCCACCCAACACTCTGCATTCCAGAGCTGATGAGAATTTTTATGGATTTGAAGGGTATGAGCTGGAATGAAGCTTGGCAAATTACTCAGAGAACTGTTGCGTACACAAACCACACTGTCTTACCTGAAGCATTGGAGAAATGGAGTTTAGAACTTATGCAGAAACTGCTTCCGCGGCATGTTGAGATTATAGAGTTGATTGATGAGGAGCTGATTAATGACATAGTATCAGAGTATGGTACATCAGATCCAGTCTTATTAGAGAAAAAATTGAATTCAATGAGAATATTGGAAAATTTCGATCTGCCTGCCTCTGTTGCTGATATATTTGTTAAACCAAAAGAGAGCTCTGTTAGTGATCTCAGTGAAGAACCTGAGATTTCTGAAGTTGCACCTACAGATGAACCTGAGATTTCTGAAGTTGCACCAACAGATGAAGAACCTGAGATTTCTGAAGTTGCACCTACAGATGAAGAACCTGAGATTTCTGAAGTTGCACCTACAGATGAAGAAGATGAGCTTGAAGAAAAAGACATGCCCAAGAAGAAAGCGGTGGATCCAGAACCAGTTCCTATTCTACCAAAGATGGTTCGTATGGCTAATCTTTGTGTTGTGGGTGGTCATGCTGTAAATGGAGTTGCTGAGATTCATAGTGAAATAGTGAAAAAAGACGTCTTTAACGATTTTTATAAGCTCTGGCCTAAGAAATTTCAGAATAAAACAAATGGAGTGACACCAAGAAGGTGGGCCCATTTCTGCAATCCAGATCTAAGTAATATCATAACTAAGTGGATTGGCACAGAAGACTGGGTCCGAGACACTGACAAGTTTGCTGAACTGCGCAAGTTTGCAGATAATGATGATCTCCAGAAGCAATGGAGGGCGGCAAAAAGGAGCAACAAAAATAAGGTGGTATCATTCATCAAGGAAAAAACAGGATATTCTGTCAGCCCTGACGCAATGTTTGACATCCAGGTGAAACGTATCCATGAATACAAGCGACAACTGTTAAATATCCTTGGAATTGTTTATCGCTACAAGAAAATGAAAGAAATGAGTCCAGAGGAGAGGAAAGCTCAATTTGTTCCTAGGGTTTGTATATTTGGGGGAAAAGCGTTCGCTACATATGTGCAAGCCAAGAGGATTGTGAAGCTTATCACGGATGTTGGGACTACTATAAACCATGATTCTGAAATTGGTGATTTGTTGAAGATCTATTGGTTGCTTGCACCCTTACCCTTATTATTTGTTTTTAAATTTTGATTTTAGGTTGTTTTTGTTCCTGATTACAATGTCACCGTTGCTGAATTGCTAATTCCTGCCAGTGAGCTTTCGCAGCATATTAGGATATTGACTCTCTCTCTCTCTCTCTCTCTCAGTACGGCGGGGATGGAAGCCAGTGGAACCAGCAACATGAAGTTTGCAATGAATGGTTGCATCTTGATTGGGACCTTGGATGGAGCCAATGTTGAAATAAGGGAAGAGGTTGGAGAAGACAATTTTTTCCTCTTTGGTGCTGAAGCTCATGAAATTGCCGGGCTTCGGAAAGAAAGAGCCGAGGGAAAGTTTGTGCCAGATGTTCGTTTTGAAGAAGTCAAGGAGTTTGTCAGGAGCGGTGTATTTGGGCCTTATAACTATGATGAACTAATGGGATCTTTGGAAGGGAATGAAGGTTATGGCCGTGCAGATTATTTCCTTGTTGGCAAGGACTTCCCAAGTTACATTGAATGCCAAGACAAGGTCAATGAGGCATATCGAGACCAAAAGAGATGGACAAGAATGTCAATCTTGAACACAGCAGGTTCGTACAAGTTCAGCAGTGACAGAACAATTCATGAATATGCCCGAGAGATTTGGAACATTGAACCTGTTGAATTACGTTGAATGAGGATCATAATGGACGCGGTACCAGGGACTAGTTTCACCAGGCAGACCTCTAGTAAATTGTCTGGAAATATGTGGAGTTGTAT

Network for GWHGAAZE014422

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00343.21	Phosphorylase	178	501	2.00E-129
PF00343.21	Phosphorylase	596	1021	1.40E-156

Protein Sequence

>GWHPAAZE014429
MATSSPLSGTTSSRSATFSHCGGSISRLIHFTTRYNNNNIRRRKSSSNFFFATPSDLRRSLSVKNVSSQPEQILKDEEAPVDLGSFTPDSESIASSIKYHAEFTPLFSPERFDLPKAYFATAQSVRDALIIHWNATYDYYEKMNVKQAYYLSMEFLQGRALLNAIGNLELTGAYGEALSKLGHNLENVAWQEPDAALGNGGLGRLASCFLDSLATLNYPAWGYGLRYKYGLFKQLITKDGQEEVAENWLEMGNPWEIIRNDVLYPIKFYGKVVTGSDGKKHWIGGEDIKAVAYDVPIPGYKTKTTINLRLWSTKVPSEDLDLYAFNAGEHTKGIEDQVNAEKICYILYPGDESMEGKILRLKQQYTLCSASLQDIIARFERRSGGHVNWEEFPEKVAVQMNDTHPTLCIPELMRIFMDLKGMSWNEAWQITQRTVAYTNHTVLPEALEKWSLELMQKLLPRHVEIIELIDEELINDIVSEYGTSDPVLLEKKLNSMRILENFDLPASVADIFVKPKESSVSDLSEEPEISEVAPTDEPEISEVAPTDEEPEISEVAPTDEEPEISEVAPTDEEDELEEKDMPKKKAVDPEPVPILPKMVRMANLCVVGGHAVNGVAEIHSEIVKKDVFNDFYKLWPKKFQNKTNGVTPRRWAHFCNPDLSNIITKWIGTEDWVRDTDKFAELRKFADNDDLQKQWRAAKRSNKNKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLLNILGIVYRYKKMKEMSPEERKAQFVPRVCIFGGKAFATYVQAKRIVKLITDVGTTINHDSEIGDLLKIYWLLAPLPLLFVFKFFVVFVPDYNVTVAELLIPASELSQHIRILTLSLSLSLSTAGMEASGTSNMKFAMNGCILIGTLDGANVEIREEVGEDNFFLFGAEAHEIAGLRKERAEGKFVPDVRFEEVKEFVRSGVFGPYNYDELMGSLEGNEGYGRADYFLVGKDFPSYIECQDKVNEAYRDQKRWTRMSILNTAGSYKFSSDRTIHEYAREIWNIEPVELR

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00688	PYG, glgP	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500
		Necroptosis	map04217
		Biofilm formation - Escherichia coli	map02026
		Insulin signaling pathway	map04910
		Glucagon signaling pathway	map04922

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0008184	molecular_function	glycogen phosphorylase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	50.480
	SRR3591706	second leaf	31.555
	SRR3591707	mature leaf	13.513
	SRR3591708	Shoot apex	38.638
	SRR3591709	Stem	28.922
	SRR3591710	White floral bud	23.074
	SRR3591711	White flower	10.780
	SRR3591712	Green floral bud	47.662
	SRR3591713	Yellow flower	2.982
SRP173429	SRR8316895	Juvenile bud stage	33.127
	SRR8316896	Juvenile bud stage	42.098
	SRR8316897	Juvenile bud stage	25.888
	SRR8316894	Third green stage	27.058
	SRR8316900	Third green stage	95.152
	SRR8316901	Third green stage	69.669
	SRR8316898	Complete white stage	14.522
	SRR8316899	Complete white stage	69.612
	SRR8316903	Complete white stage	20.792
	SRR8316902	Silver flowering stage	9.251
	SRR8316904	Silver flowering stage	14.022
	SRR8316905	Silver flowering stage	8.177
	SRR8316906	Gold flowering stage	13.800
	SRR8316907	Gold flowering stage	15.161
	SRR8316908	Gold flowering stage	15.169
SRP132670	SRR6706286	Control	55.435
	SRR6706287	Light intensity 50%	67.935
	SRR6706288	Light intensity 20%	76.369
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	35.094
	CNS0095593	Slightly white alabastrum(diploid) 2	41.711
	CNS0095594	Slightly white alabastrum(diploid) 3	27.093
	CNS0095595	Whole white alabastrum(diploid) 2	41.784
	CNS0095596	Whole white alabastrum(diploid) 3	36.454
	CNS0095597	Whole white alabastrum(diploid) 4	32.288
	CNS0095598	Silvery flower (diploied) 1	25.154
	CNS0095599	Silvery flower (diploied) 2	31.936
	CNS0095600	Silvery flower (diploied) 3	27.008
	CNS0095601	Golden flower (diploid) 1	19.831
	CNS0095602	Golden flower (diploid) 2	17.424
	CNS0095603	Golden flower (diploid) 3	16.084
	CNS0095604	Slightly white alabastrum(tetraploid) 1	53.870
	CNS0095605	Slightly white alabastrum(tetraploid) 2	43.507
	CNS0095606	Slightly white alabastrum(tetraploid) 3	106.030
	CNS0095607	Whole white alabastrum(tetraploid) 1	28.757
	CNS0095608	Whole white alabastrum(tetraploid) 2	30.798
	CNS0095609	Whole white alabastrum(tetraploid) 3	100.189
	CNS0095610	Silvery flower (tetraploid) 1	15.861
	CNS0095611	Silvery flower (tetraploid) 2	34.023
	CNS0095612	Silvery flower (tetraploid) 3	21.640
	CNS0095613	Golden flower (tetraploid) 1	4.183
	CNS0095614	Golden flower (tetraploid) 2	4.515
	CNS0095615	Golden flower (tetraploid) 3	3.778
CRA001975	CRR073297	Stem 1	56.541
	CRR073298	Stem 2	55.976
	CRR073299	Stem 3	45.521
	CRR073300	Leaf 1	82.478
	CRR073301	Leaf 2	70.732
	CRR073302	Leaf 3	63.211
	CRR073303	Juvenile bud 1	73.036
	CRR073304	Juvenile bud 2	36.201
	CRR073305	Juvenile bud 3	74.050
	CRR073306	Third green 1	20.050
	CRR073307	Third green 2	12.186
	CRR073308	Third green 3	15.117
	CRR073309	Second white 1	9.228
	CRR073310	Second white 2	4.594
	CRR073311	Second white 3	5.255
	CRR073312	Silver flowering 1	0.488
	CRR073313	Silver flowering 2	0.416
	CRR073314	Silver flowering 3	1.366
	CRR073315	Gold flowering 1	16.794
	CRR073316	Gold flowering 2	31.953
	CRR073317	Gold flowering 3	14.089
	CRR073318	Tawny withering 1	12.919
	CRR073319	Tawny withering 2	14.930
	CRR073320	Tawny withering 3	20.410