Gene detail

Detail information of GWHGAAZE014427

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010661139.1	2.07375E-92	PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, chloroplastic isoform X2 [Vitis vinifera]
Swissprot	tr\|Q9LLC1\|BCCP2_ARATH	5E-65	Biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, chloroplastic (Precursor)
trEMBL	tr\|D7SXK0\|D7SXK0_VITVI	3E-92	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI22297.3}
TAIR10	AT5G16390.1	3E-39	chloroplastic acetylcoenzyme A carboxylase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	11741359	11746044	+
GWHAAZE00000004	mRNA	11741359	11746044	+
GWHAAZE00000004	exon	11741359	11741532	+
GWHAAZE00000004	exon	11744198	11744251	+
GWHAAZE00000004	exon	11744648	11744805	+
GWHAAZE00000004	exon	11744907	11745231	+
GWHAAZE00000004	exon	11745356	11745427	+
GWHAAZE00000004	exon	11745867	11745932	+
GWHAAZE00000004	exon	11746021	11746044	+
GWHAAZE00000004	CDS	11741359	11741532	+
GWHAAZE00000004	CDS	11744198	11744251	+
GWHAAZE00000004	CDS	11744648	11744805	+
GWHAAZE00000004	CDS	11744907	11745231	+
GWHAAZE00000004	CDS	11745356	11745427	+
GWHAAZE00000004	CDS	11745867	11745932	+
GWHAAZE00000004	CDS	11746021	11746044	+

Transcript Sequence
>GWHTAAZE014441 ATGGCCTCATTCTCAGTTACTTGCCCCAAAGCCATTTTATCCCCACATTTATTATCTACCCCTACTAAATCGACGCCCCGTCTCCCCAACAAGATCTGCTGCCATTCAAGGCCTTCTTCGTTGGTGGTTTCTCGATCTTTTCTCAATGACCCAACTCCCGTTCCCGGATTTCAGTCAAATTACTGGAAGCAAAGTGCTTCTTGGAGATTGCATGTGCAGCTTAATGATGTTGCCTCTGAAAGATCGTTAAATTCTGCTCCAATACCTGAGACAAAATCTGAAGCAGCACTTTTTGAAGAACCTTTAGAAGAAGTTTCTGATGAAAACACAACTCTAGATGAGTTAGCAATTTCTGCATTCATGACTGAAGTATCAGACCTGATCAAGATTGTGGATGCAAGTGATATTGTGGAGCTGGAGCTGAAGCAACTTGGCTGTGAGCTCACAATAAGAAAGAAGGAAGCTATGGAGCAGCCACCAGCAGCAGCTCCCATTTACTCAATGCAACCACCTATTTACCATTCAGCACTGCCGCCACCACCCCAAGCAGCCGCTCCTGCTGCCACAGCTCCACCTCCTTCAGCTCCAACACTTGCCTTGCCTGCTCCTGCTGCACCAAAACCAAGCACTTCATCTCACCCACCATTCAAATGCCCCATGGCTGGTACCTTTTACCGGTGCCCTGCACCTGGTGAACCGCCATTTGTGAAGGTAGGAGATAAGGTGCAGAAAGGCCAGGTCATTTGCATCATTGAGGCCATGAAACTGATGAATGAAATTGAAGCTGATCAAGCAGGAACTGTAACTGAGATACTAGTAGATGATGGAAAACCAGTTAGCGTGGACTTGCCACTCTTTGTTATTGTTCCATGA

Network for GWHGAAZE014427

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00364.23	Biotin_lipoyl	216	288	1.20E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02160	accB, bccP	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Fatty acid metabolism	map01212
		Pyruvate metabolism	map00620
		Propanoate metabolism	map00640
		Carbon fixation pathways in prokaryotes	map00720
		Fatty acid biosynthesis	map00061

Gene Ontology

GO term	Ontology	Name
GO:0006633	biological_process	fatty acid biosynthetic process
GO:0009317	cellular_component	acetyl-CoA carboxylase complex
GO:0003989	molecular_function	acetyl-CoA carboxylase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	45.545
	SRR3591706	second leaf	76.829
	SRR3591707	mature leaf	18.309
	SRR3591708	Shoot apex	74.407
	SRR3591709	Stem	21.893
	SRR3591710	White floral bud	41.063
	SRR3591711	White flower	21.723
	SRR3591712	Green floral bud	59.863
	SRR3591713	Yellow flower	13.506
SRP173429	SRR8316895	Juvenile bud stage	23.064
	SRR8316896	Juvenile bud stage	30.630
	SRR8316897	Juvenile bud stage	18.204
	SRR8316894	Third green stage	14.291
	SRR8316900	Third green stage	47.810
	SRR8316901	Third green stage	40.929
	SRR8316898	Complete white stage	14.555
	SRR8316899	Complete white stage	40.575
	SRR8316903	Complete white stage	26.454
	SRR8316902	Silver flowering stage	7.235
	SRR8316904	Silver flowering stage	10.779
	SRR8316905	Silver flowering stage	3.403
	SRR8316906	Gold flowering stage	9.124
	SRR8316907	Gold flowering stage	7.680
	SRR8316908	Gold flowering stage	10.865
SRP132670	SRR6706286	Control	48.945
	SRR6706287	Light intensity 50%	53.904
	SRR6706288	Light intensity 20%	59.992
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	23.221
	CNS0095593	Slightly white alabastrum(diploid) 2	27.038
	CNS0095594	Slightly white alabastrum(diploid) 3	20.456
	CNS0095595	Whole white alabastrum(diploid) 2	21.647
	CNS0095596	Whole white alabastrum(diploid) 3	24.839
	CNS0095597	Whole white alabastrum(diploid) 4	22.752
	CNS0095598	Silvery flower (diploied) 1	13.068
	CNS0095599	Silvery flower (diploied) 2	17.271
	CNS0095600	Silvery flower (diploied) 3	17.500
	CNS0095601	Golden flower (diploid) 1	9.310
	CNS0095602	Golden flower (diploid) 2	11.902
	CNS0095603	Golden flower (diploid) 3	11.085
	CNS0095604	Slightly white alabastrum(tetraploid) 1	28.034
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.398
	CNS0095606	Slightly white alabastrum(tetraploid) 3	43.338
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.014
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.643
	CNS0095609	Whole white alabastrum(tetraploid) 3	39.224
	CNS0095610	Silvery flower (tetraploid) 1	10.900
	CNS0095611	Silvery flower (tetraploid) 2	14.524
	CNS0095612	Silvery flower (tetraploid) 3	19.330
	CNS0095613	Golden flower (tetraploid) 1	3.677
	CNS0095614	Golden flower (tetraploid) 2	10.480
	CNS0095615	Golden flower (tetraploid) 3	3.931
CRA001975	CRR073297	Stem 1	46.968
	CRR073298	Stem 2	46.032
	CRR073299	Stem 3	43.943
	CRR073300	Leaf 1	59.313
	CRR073301	Leaf 2	67.038
	CRR073302	Leaf 3	64.920
	CRR073303	Juvenile bud 1	52.563
	CRR073304	Juvenile bud 2	68.686
	CRR073305	Juvenile bud 3	66.997
	CRR073306	Third green 1	19.125
	CRR073307	Third green 2	20.526
	CRR073308	Third green 3	20.613
	CRR073309	Second white 1	12.557
	CRR073310	Second white 2	8.300
	CRR073311	Second white 3	9.702
	CRR073312	Silver flowering 1	5.930
	CRR073313	Silver flowering 2	3.504
	CRR073314	Silver flowering 3	7.423
	CRR073315	Gold flowering 1	35.593
	CRR073316	Gold flowering 2	39.867
	CRR073317	Gold flowering 3	29.029
	CRR073318	Tawny withering 1	51.846
	CRR073319	Tawny withering 2	31.500
	CRR073320	Tawny withering 3	69.067