Gene detail

Detail information of GWHGAAZE014445

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009370377.1	6.31201E-51	PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Pyrus x bretschneideri]
Swissprot	tr\|Q9LNG5\|PPP7L_ARATH	4E-15	Serine/threonine-protein phosphatase 7 long form homolog
trEMBL	tr\|A0A059DGU0\|A0A059DGU0_EUCGR	2E-21	Uncharacterized protein {ECO:0000313\|EMBL:KCW89694.1}
TAIR10	AT2G04865.1	4E-19	Aminotransferase-like, plant mobile domain family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	12135456	12137594	+
GWHAAZE00000004	mRNA	12135456	12137594	+
GWHAAZE00000004	exon	12135456	12135983	+
GWHAAZE00000004	exon	12136392	12136582	+
GWHAAZE00000004	exon	12136679	12136790	+
GWHAAZE00000004	exon	12136897	12137064	+
GWHAAZE00000004	exon	12137151	12137594	+
GWHAAZE00000004	CDS	12135456	12135983	+
GWHAAZE00000004	CDS	12136392	12136582	+
GWHAAZE00000004	CDS	12136679	12136790	+
GWHAAZE00000004	CDS	12136897	12137064	+
GWHAAZE00000004	CDS	12137151	12137594	+

Transcript Sequence
>GWHTAAZE014459 ATGACAGCCTCGGAGAGGCAACGAAGAGTAAAGTTTGTTGCTACTACTACAGCTAAAGTACATTGTGGGTACAAAAGGGGGAAGGTTGATCCACCAAATGCATCAGAGTCAGGGATTGCTGAACAAAGTCAATCTCTTCGGGTTGAGAGAGAGGAGCTAGTCGAGCTATCCCCAGAATTAGAAGAAGCGGTTCCACAACTCGACGAAGGTCGCAGCGAATGTCCAAGCACTGGCGGCGGTGTTTCCCCTCCCGACGATGAGAGAGGTCAACTTAATAAATCGGTATCTACTAATGAAGGTCCAGGCCCTATTGTTAGTCCTAGCAATGGCGACGGTGTTTCCCCTATGGAAGACGATGGAGGTCCAGTTGATAAATCAGTACCTACCAATGAAGGTCCAGGCCCAAGTCATAGTCGTAATAGTGGCAGCGGTGTTCCCCCGACCAGAGACAATGGAGGTCCAATTGATAAATCTGTACTTATTAGCTTTGAGAGCCACGTGGCGTATGCAATATGGAACTGCTCGGAGGACGGAGGAAAAGAGATAGAACCGGAAATGGCGATTACATTGGTGAAAGATTTGTTGGGCATTCGTGATAGCGATGTAAGGAGGGAAACACCAAAATCCTATTCGGTCAAGCTTGATTGGGTAAAACGCCACTGTATGGGTAGAGCTATTCAAGAATCAACTCTAGAGGAACTTGATCAATGTGCGAGGGGGGTTTCTGAAAATGGATGGGGTATGGCGATACTAGCACATTTGTATCGTCAGTTGGGTATGGCATCCAGAGCGAATGTGATGCAGATTTCTGGTTGTTTGACTCTGCTTGTGGCTTGGATTGCTGACCACTTTCTGGATTGTTCAAGAGTGGTTTACAATATGGAGTACACGGAGCTTATGCCACGTATATACAAGTGGAAGTCACAACAATGCAATGGAGATACACATATGGCCGCAATAAGGTTGAGAGAGAAGTTTGATAATTTAACTGAGAAAGATGTGATATGGGATCCTTATAAGGACCACAGAGATGCACATCCCTTGCACGAGGTTTCGTACTATTGCGGCTTACTATTATGCTACGACATTGCCGAAGCATACTACCCTGACCGTGTACTTAGGCAGTTTGGTCGCGTCCAAACTATTCCGACCATGCCGATGATCAAATCAAAAAAGTCAATACGAGGAAAAACCACTAAAGGATATAAGGTGGAGTATAACCTTAGTGGGTGGCACCAAGAGAATTGGAGGAATCATTTGCTTAACATCTCATCTCAGTCTGTACCTGTGCGCTATCTTTGGGAATGTGCTCCTGATTATATAGATTGGTTTTTAAGGATCAGCCATCCATATGTTCAACCTCCATCATTGAGAACTATCCCCCAGAGGACACGAGATGTCTATGACAAAGAATTGGCTAAGTTGGTAAGGACATCACTTTAA

Network for GWHGAAZE014445

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0139

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10536.10	PMD	225	444	1.80E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.200
	SRR8316896	Juvenile bud stage	0.185
	SRR8316897	Juvenile bud stage	3.082
	SRR8316894	Third green stage	0.056
	SRR8316900	Third green stage	0.104
	SRR8316901	Third green stage	0.114
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.778
SRP132670	SRR6706286	Control	0.101
	SRR6706287	Light intensity 50%	0.112
	SRR6706288	Light intensity 20%	0.147
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.180
	CNS0095593	Slightly white alabastrum(diploid) 2	0.047
	CNS0095594	Slightly white alabastrum(diploid) 3	0.218
	CNS0095595	Whole white alabastrum(diploid) 2	0.141
	CNS0095596	Whole white alabastrum(diploid) 3	0.263
	CNS0095597	Whole white alabastrum(diploid) 4	0.126
	CNS0095598	Silvery flower (diploied) 1	0.249
	CNS0095599	Silvery flower (diploied) 2	0.154
	CNS0095600	Silvery flower (diploied) 3	0.100
	CNS0095601	Golden flower (diploid) 1	0.037
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.048
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.365
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.758
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.777
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.881
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.300
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.228
	CNS0095610	Silvery flower (tetraploid) 1	0.483
	CNS0095611	Silvery flower (tetraploid) 2	0.220
	CNS0095612	Silvery flower (tetraploid) 3	1.704
	CNS0095613	Golden flower (tetraploid) 1	0.136
	CNS0095614	Golden flower (tetraploid) 2	0.251
	CNS0095615	Golden flower (tetraploid) 3	2.462
CRA001975	CRR073297	Stem 1	0.165
	CRR073298	Stem 2	0.429
	CRR073299	Stem 3	0.228
	CRR073300	Leaf 1	0.147
	CRR073301	Leaf 2	0.247
	CRR073302	Leaf 3	0.298
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.398
	CRR073316	Gold flowering 2	0.212
	CRR073317	Gold flowering 3	0.201
	CRR073318	Tawny withering 1	0.390
	CRR073319	Tawny withering 2	0.841
	CRR073320	Tawny withering 3	1.361