Detail information of GWHGAAZE014455


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007149999.11.82428E-30hypothetical protein PHAVU_005G117400g [Phaseolus vulgaris]
Swissprottr|Q9ZT42|RHF2A_ARATH1E-29E3 ubiquitin-protein ligase RHF2A
trEMBLtr|V7BY53|V7BY53_PHAVU7E-31Uncharacterized protein {ECO:0000313|EMBL:ESW21993.1}
TAIR10AT5G22000.21E-24RING-H2 group F2A

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene1227232212272735+
GWHAAZE00000004mRNA1227232212272735+
GWHAAZE00000004exon1227232212272453+
GWHAAZE00000004exon1227253212272735+
GWHAAZE00000004CDS1227232212272453+
GWHAAZE00000004CDS1227253212272735+
Transcript Sequence

Network for GWHGAAZE014455

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF17123.6zf-RING_1130575.40E-07
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf29.422
SRR3591706second leaf19.081
SRR3591707mature leaf16.356
SRR3591708Shoot apex15.066
SRR3591709Stem28.709
SRR3591710White floral bud25.736
SRR3591711White flower45.711
SRR3591712Green floral bud17.259
SRR3591713Yellow flower41.438
SRP173429 SRR8316895Juvenile bud stage 14.402
SRR8316896Juvenile bud stage 25.110
SRR8316897Juvenile bud stage 10.781
SRR8316894Third green stage 8.340
SRR8316900Third green stage 17.781
SRR8316901Third green stage 20.559
SRR8316898Complete white stage 8.757
SRR8316899Complete white stage 29.663
SRR8316903Complete white stage 14.455
SRR8316902Silver flowering stage12.875
SRR8316904Silver flowering stage18.297
SRR8316905Silver flowering stage9.778
SRR8316906Gold flowering stage 33.738
SRR8316907Gold flowering stage 34.249
SRR8316908Gold flowering stage 40.190
SRP132670SRR6706286Control36.947
SRR6706287Light intensity 50%30.553
SRR6706288Light intensity 20%30.625
CNP0000432CNS0095592Slightly white alabastrum(diploid) 113.104
CNS0095593Slightly white alabastrum(diploid) 213.291
CNS0095594Slightly white alabastrum(diploid) 38.774
CNS0095595Whole white alabastrum(diploid) 29.673
CNS0095596Whole white alabastrum(diploid) 37.287
CNS0095597Whole white alabastrum(diploid) 410.432
CNS0095598Silvery flower (diploied) 113.631
CNS0095599Silvery flower (diploied) 216.284
CNS0095600Silvery flower (diploied) 330.407
CNS0095601Golden flower (diploid) 114.310
CNS0095602Golden flower (diploid) 234.896
CNS0095603Golden flower (diploid) 328.838
CNS0095604Slightly white alabastrum(tetraploid) 113.920
CNS0095605Slightly white alabastrum(tetraploid) 210.518
CNS0095606Slightly white alabastrum(tetraploid) 314.926
CNS0095607Whole white alabastrum(tetraploid) 112.650
CNS0095608Whole white alabastrum(tetraploid) 28.766
CNS0095609Whole white alabastrum(tetraploid) 314.065
CNS0095610Silvery flower (tetraploid) 135.332
CNS0095611Silvery flower (tetraploid) 239.114
CNS0095612Silvery flower (tetraploid) 332.202
CNS0095613Golden flower (tetraploid) 117.529
CNS0095614Golden flower (tetraploid) 228.031
CNS0095615Golden flower (tetraploid) 340.636
CRA001975CRR073297Stem 123.216
CRR073298Stem 224.485
CRR073299Stem 329.068
CRR073300Leaf 119.889
CRR073301Leaf 225.797
CRR073302Leaf 322.738
CRR073303Juvenile bud 120.392
CRR073304Juvenile bud 218.653
CRR073305Juvenile bud 320.945
CRR073306Third green 128.614
CRR073307Third green 233.206
CRR073308Third green 329.355
CRR073309Second white 151.118
CRR073310Second white 244.609
CRR073311Second white 339.656
CRR073312Silver flowering 140.980
CRR073313Silver flowering 229.292
CRR073314Silver flowering 340.743
CRR073315Gold flowering 117.168
CRR073316Gold flowering 232.569
CRR073317Gold flowering 324.385
CRR073318Tawny withering 124.549
CRR073319Tawny withering 229.039
CRR073320Tawny withering 319.825