Detail information of GWHGAAZE014458


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP02344.11.0284E-108unnamed protein product [Coffea canephora]
Swissprottr|Q8LE94|RING3_ARATH2E-61E3 ubiquitin-protein ligase At3g02290
trEMBLtr|A0A068U2D7|A0A068U2D7_COFCA4E-109Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313|EMBL:CDP02344.1}
TAIR10AT5G15790.28E-49RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene1237561612379776-
GWHAAZE00000004mRNA1237561612379776-
GWHAAZE00000004exon1237960612379776-
GWHAAZE00000004exon1237709612377500-
GWHAAZE00000004exon1237561612375861-
GWHAAZE00000004CDS1237960612379776-
GWHAAZE00000004CDS1237709612377500-
GWHAAZE00000004CDS1237561612375861-
Transcript Sequence

Network for GWHGAAZE014458

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_22222572.60E-08
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf20.301
SRR3591706second leaf8.729
SRR3591707mature leaf8.601
SRR3591708Shoot apex10.066
SRR3591709Stem26.212
SRR3591710White floral bud23.225
SRR3591711White flower16.323
SRR3591712Green floral bud15.397
SRR3591713Yellow flower15.433
SRP173429 SRR8316895Juvenile bud stage 9.232
SRR8316896Juvenile bud stage 11.890
SRR8316897Juvenile bud stage 7.705
SRR8316894Third green stage 5.877
SRR8316900Third green stage 15.689
SRR8316901Third green stage 15.961
SRR8316898Complete white stage 8.545
SRR8316899Complete white stage 26.396
SRR8316903Complete white stage 12.623
SRR8316902Silver flowering stage8.296
SRR8316904Silver flowering stage10.961
SRR8316905Silver flowering stage4.194
SRR8316906Gold flowering stage 18.487
SRR8316907Gold flowering stage 17.332
SRR8316908Gold flowering stage 19.983
SRP132670SRR6706286Control12.199
SRR6706287Light intensity 50%13.761
SRR6706288Light intensity 20%14.865
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.191
CNS0095593Slightly white alabastrum(diploid) 215.118
CNS0095594Slightly white alabastrum(diploid) 312.862
CNS0095595Whole white alabastrum(diploid) 213.632
CNS0095596Whole white alabastrum(diploid) 38.850
CNS0095597Whole white alabastrum(diploid) 414.318
CNS0095598Silvery flower (diploied) 113.412
CNS0095599Silvery flower (diploied) 211.498
CNS0095600Silvery flower (diploied) 317.271
CNS0095601Golden flower (diploid) 113.585
CNS0095602Golden flower (diploid) 211.865
CNS0095603Golden flower (diploid) 313.807
CNS0095604Slightly white alabastrum(tetraploid) 115.075
CNS0095605Slightly white alabastrum(tetraploid) 210.386
CNS0095606Slightly white alabastrum(tetraploid) 317.646
CNS0095607Whole white alabastrum(tetraploid) 110.414
CNS0095608Whole white alabastrum(tetraploid) 29.898
CNS0095609Whole white alabastrum(tetraploid) 313.597
CNS0095610Silvery flower (tetraploid) 117.222
CNS0095611Silvery flower (tetraploid) 216.396
CNS0095612Silvery flower (tetraploid) 313.781
CNS0095613Golden flower (tetraploid) 111.368
CNS0095614Golden flower (tetraploid) 212.883
CNS0095615Golden flower (tetraploid) 311.664
CRA001975CRR073297Stem 117.155
CRR073298Stem 213.759
CRR073299Stem 38.999
CRR073300Leaf 117.893
CRR073301Leaf 218.104
CRR073302Leaf 310.608
CRR073303Juvenile bud 18.921
CRR073304Juvenile bud 212.845
CRR073305Juvenile bud 313.403
CRR073306Third green 17.484
CRR073307Third green 27.117
CRR073308Third green 39.233
CRR073309Second white 16.134
CRR073310Second white 24.327
CRR073311Second white 35.837
CRR073312Silver flowering 13.054
CRR073313Silver flowering 22.341
CRR073314Silver flowering 35.518
CRR073315Gold flowering 15.901
CRR073316Gold flowering 212.601
CRR073317Gold flowering 33.076
CRR073318Tawny withering 114.772
CRR073319Tawny withering 215.071
CRR073320Tawny withering 317.932