Detail information of GWHGAAZE014463


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010660565.10PREDICTED: auxin transport protein BIG [Vitis vinifera]
Swissprottr|Q9SRU2|BIG_ARATH0Auxin transport protein BIG
trEMBLtr|F6GVU9|F6GVU9_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB44084.1}
TAIR10AT3G02260.10auxin transport protein (BIG)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene1246721212488602+
GWHAAZE00000004mRNA1246721212488602+
GWHAAZE00000004exon1246721212467571+
GWHAAZE00000004exon1246767012467776+
GWHAAZE00000004exon1246785412467893+
GWHAAZE00000004exon1246804912468133+
GWHAAZE00000004exon1246868012468743+
GWHAAZE00000004exon1246917112469321+
GWHAAZE00000004exon1246941712475487+
GWHAAZE00000004exon1247627112476888+
GWHAAZE00000004exon1247706812477248+
GWHAAZE00000004exon1247811112478345+
GWHAAZE00000004exon1247844412479386+
GWHAAZE00000004exon1247948512483008+
GWHAAZE00000004exon1248308612483308+
GWHAAZE00000004exon1248373712484141+
GWHAAZE00000004exon1248430912484452+
GWHAAZE00000004exon1248498512485559+
GWHAAZE00000004exon1248565512486009+
GWHAAZE00000004exon1248717812487681+
GWHAAZE00000004exon1248777212488602+
GWHAAZE00000004five_prime_UTR1246721212467324+
GWHAAZE00000004CDS1246732512467571+
GWHAAZE00000004CDS1246767012467776+
GWHAAZE00000004CDS1246785412467893+
GWHAAZE00000004CDS1246804912468133+
GWHAAZE00000004CDS1246868012468743+
GWHAAZE00000004CDS1246917112469321+
GWHAAZE00000004CDS1246941712475487+
GWHAAZE00000004CDS1247627112476888+
GWHAAZE00000004CDS1247706812477248+
GWHAAZE00000004CDS1247811112478345+
GWHAAZE00000004CDS1247844412479386+
GWHAAZE00000004CDS1247948512483008+
GWHAAZE00000004CDS1248308612483308+
GWHAAZE00000004CDS1248373712484141+
GWHAAZE00000004CDS1248430912484452+
GWHAAZE00000004CDS1248498512485559+
GWHAAZE00000004CDS1248565512486009+
GWHAAZE00000004CDS1248717812487681+
GWHAAZE00000004CDS1248777212488602+
Transcript Sequence

Network for GWHGAAZE014463

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00569.18ZZ265826902.10E-09
PF13764.7E3_UbLigase_R4420050740
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUBR-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270molecular_functionzinc ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf22.168
SRR3591706second leaf10.382
SRR3591707mature leaf11.316
SRR3591708Shoot apex13.689
SRR3591709Stem22.323
SRR3591710White floral bud17.825
SRR3591711White flower21.480
SRR3591712Green floral bud19.297
SRR3591713Yellow flower9.740
SRP173429 SRR8316895Juvenile bud stage 10.199
SRR8316896Juvenile bud stage 13.056
SRR8316897Juvenile bud stage 7.964
SRR8316894Third green stage 8.438
SRR8316900Third green stage 14.841
SRR8316901Third green stage 13.932
SRR8316898Complete white stage 1.947
SRR8316899Complete white stage 10.470
SRR8316903Complete white stage 10.123
SRR8316902Silver flowering stage4.086
SRR8316904Silver flowering stage7.689
SRR8316905Silver flowering stage3.427
SRR8316906Gold flowering stage 10.974
SRR8316907Gold flowering stage 9.658
SRR8316908Gold flowering stage 10.303
SRP132670SRR6706286Control11.862
SRR6706287Light intensity 50%13.948
SRR6706288Light intensity 20%15.513
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.525
CNS0095593Slightly white alabastrum(diploid) 28.276
CNS0095594Slightly white alabastrum(diploid) 38.003
CNS0095595Whole white alabastrum(diploid) 28.394
CNS0095596Whole white alabastrum(diploid) 36.319
CNS0095597Whole white alabastrum(diploid) 47.672
CNS0095598Silvery flower (diploied) 113.208
CNS0095599Silvery flower (diploied) 211.063
CNS0095600Silvery flower (diploied) 325.872
CNS0095601Golden flower (diploid) 111.567
CNS0095602Golden flower (diploid) 226.787
CNS0095603Golden flower (diploid) 326.295
CNS0095604Slightly white alabastrum(tetraploid) 110.032
CNS0095605Slightly white alabastrum(tetraploid) 27.944
CNS0095606Slightly white alabastrum(tetraploid) 324.555
CNS0095607Whole white alabastrum(tetraploid) 16.899
CNS0095608Whole white alabastrum(tetraploid) 25.120
CNS0095609Whole white alabastrum(tetraploid) 313.755
CNS0095610Silvery flower (tetraploid) 119.597
CNS0095611Silvery flower (tetraploid) 223.148
CNS0095612Silvery flower (tetraploid) 313.298
CNS0095613Golden flower (tetraploid) 15.429
CNS0095614Golden flower (tetraploid) 212.337
CNS0095615Golden flower (tetraploid) 317.900
CRA001975CRR073297Stem 117.700
CRR073298Stem 216.257
CRR073299Stem 310.080
CRR073300Leaf 118.515
CRR073301Leaf 215.131
CRR073302Leaf 38.912
CRR073303Juvenile bud 113.421
CRR073304Juvenile bud 25.997
CRR073305Juvenile bud 324.847
CRR073306Third green 14.608
CRR073307Third green 22.681
CRR073308Third green 35.387
CRR073309Second white 13.854
CRR073310Second white 24.543
CRR073311Second white 36.578
CRR073312Silver flowering 15.656
CRR073313Silver flowering 25.126
CRR073314Silver flowering 34.912
CRR073315Gold flowering 14.973
CRR073316Gold flowering 29.319
CRR073317Gold flowering 37.498
CRR073318Tawny withering 112.321
CRR073319Tawny withering 211.903
CRR073320Tawny withering 310.315