Detail information of GWHGAAZE014468


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009629961.10PREDICTED: F-box/kelch-repeat protein At5g15710 [Nicotiana tomentosiformis]
Swissprottr|Q9LFV5|FK111_ARATH0F-box/kelch-repeat protein At5g15710
trEMBLtr|K4BC83|K4BC83_SOLLC0Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc02g089310.1.1}
TAIR10AT5G15710.10Galactose oxidase/kelch repeat superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene1256156112562877-
GWHAAZE00000004mRNA1256156112562877-
GWHAAZE00000004exon1256156112562877-
GWHAAZE00000004CDS1256156112562877-
Transcript Sequence

Network for GWHGAAZE014468

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box951354.50E-09
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf8.932
SRR3591706second leaf5.820
SRR3591707mature leaf7.069
SRR3591708Shoot apex9.106
SRR3591709Stem11.210
SRR3591710White floral bud12.496
SRR3591711White flower16.945
SRR3591712Green floral bud10.433
SRR3591713Yellow flower13.803
SRP173429 SRR8316895Juvenile bud stage 4.463
SRR8316896Juvenile bud stage 6.573
SRR8316897Juvenile bud stage 2.672
SRR8316894Third green stage 3.362
SRR8316900Third green stage 10.533
SRR8316901Third green stage 8.027
SRR8316898Complete white stage 6.257
SRR8316899Complete white stage 12.675
SRR8316903Complete white stage 12.553
SRR8316902Silver flowering stage6.724
SRR8316904Silver flowering stage9.167
SRR8316905Silver flowering stage4.270
SRR8316906Gold flowering stage 16.870
SRR8316907Gold flowering stage 12.434
SRR8316908Gold flowering stage 16.870
SRP132670SRR6706286Control9.224
SRR6706287Light intensity 50%9.116
SRR6706288Light intensity 20%10.945
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.328
CNS0095593Slightly white alabastrum(diploid) 26.103
CNS0095594Slightly white alabastrum(diploid) 36.123
CNS0095595Whole white alabastrum(diploid) 28.218
CNS0095596Whole white alabastrum(diploid) 37.507
CNS0095597Whole white alabastrum(diploid) 48.048
CNS0095598Silvery flower (diploied) 15.688
CNS0095599Silvery flower (diploied) 25.557
CNS0095600Silvery flower (diploied) 314.937
CNS0095601Golden flower (diploid) 18.026
CNS0095602Golden flower (diploid) 214.081
CNS0095603Golden flower (diploid) 314.106
CNS0095604Slightly white alabastrum(tetraploid) 17.345
CNS0095605Slightly white alabastrum(tetraploid) 26.843
CNS0095606Slightly white alabastrum(tetraploid) 311.344
CNS0095607Whole white alabastrum(tetraploid) 16.797
CNS0095608Whole white alabastrum(tetraploid) 27.801
CNS0095609Whole white alabastrum(tetraploid) 310.357
CNS0095610Silvery flower (tetraploid) 111.554
CNS0095611Silvery flower (tetraploid) 211.121
CNS0095612Silvery flower (tetraploid) 314.339
CNS0095613Golden flower (tetraploid) 18.218
CNS0095614Golden flower (tetraploid) 211.784
CNS0095615Golden flower (tetraploid) 318.873
CRA001975CRR073297Stem 111.219
CRR073298Stem 212.433
CRR073299Stem 310.140
CRR073300Leaf 110.023
CRR073301Leaf 210.961
CRR073302Leaf 310.870
CRR073303Juvenile bud 113.075
CRR073304Juvenile bud 29.429
CRR073305Juvenile bud 313.159
CRR073306Third green 111.326
CRR073307Third green 210.240
CRR073308Third green 311.490
CRR073309Second white 113.515
CRR073310Second white 29.532
CRR073311Second white 311.858
CRR073312Silver flowering 111.885
CRR073313Silver flowering 212.706
CRR073314Silver flowering 38.551
CRR073315Gold flowering 17.042
CRR073316Gold flowering 27.192
CRR073317Gold flowering 36.662
CRR073318Tawny withering 19.758
CRR073319Tawny withering 29.688
CRR073320Tawny withering 310.917