Detail information of GWHGAAZE014476


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006338313.15.70207E-61PREDICTED: uncharacterized protein LOC102594265 [Solanum tuberosum]
Swissprottr|Q8LPN7|RNG1L_ARATH3E-24E3 ubiquitin-protein ligase RING1-like
trEMBLtr|M0ZLT7|M0ZLT7_SOLTU2E-61Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400003515}
TAIR10AT3G02340.14E-30RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene1272824412729302+
GWHAAZE00000004mRNA1272824412729302+
GWHAAZE00000004exon1272824412729302+
GWHAAZE00000004CDS1272824412729302+
Transcript Sequence

Network for GWHGAAZE014476

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_22993405.60E-12
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.558
SRR3591706second leaf1.792
SRR3591707mature leaf2.417
SRR3591708Shoot apex3.859
SRR3591709Stem3.250
SRR3591710White floral bud3.073
SRR3591711White flower5.373
SRR3591712Green floral bud5.673
SRR3591713Yellow flower2.891
SRP173429 SRR8316895Juvenile bud stage 1.918
SRR8316896Juvenile bud stage 5.220
SRR8316897Juvenile bud stage 1.795
SRR8316894Third green stage 1.684
SRR8316900Third green stage 6.770
SRR8316901Third green stage 4.109
SRR8316898Complete white stage 2.674
SRR8316899Complete white stage 7.668
SRR8316903Complete white stage 3.922
SRR8316902Silver flowering stage2.947
SRR8316904Silver flowering stage4.052
SRR8316905Silver flowering stage1.327
SRR8316906Gold flowering stage 6.882
SRR8316907Gold flowering stage 2.708
SRR8316908Gold flowering stage 3.519
SRP132670SRR6706286Control1.370
SRR6706287Light intensity 50%1.902
SRR6706288Light intensity 20%2.100
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.642
CNS0095593Slightly white alabastrum(diploid) 24.197
CNS0095594Slightly white alabastrum(diploid) 35.117
CNS0095595Whole white alabastrum(diploid) 25.208
CNS0095596Whole white alabastrum(diploid) 34.686
CNS0095597Whole white alabastrum(diploid) 44.842
CNS0095598Silvery flower (diploied) 12.756
CNS0095599Silvery flower (diploied) 24.233
CNS0095600Silvery flower (diploied) 35.167
CNS0095601Golden flower (diploid) 14.260
CNS0095602Golden flower (diploid) 24.135
CNS0095603Golden flower (diploid) 35.559
CNS0095604Slightly white alabastrum(tetraploid) 15.766
CNS0095605Slightly white alabastrum(tetraploid) 24.775
CNS0095606Slightly white alabastrum(tetraploid) 36.756
CNS0095607Whole white alabastrum(tetraploid) 14.245
CNS0095608Whole white alabastrum(tetraploid) 24.501
CNS0095609Whole white alabastrum(tetraploid) 36.240
CNS0095610Silvery flower (tetraploid) 13.466
CNS0095611Silvery flower (tetraploid) 24.916
CNS0095612Silvery flower (tetraploid) 34.385
CNS0095613Golden flower (tetraploid) 14.873
CNS0095614Golden flower (tetraploid) 24.808
CNS0095615Golden flower (tetraploid) 34.939
CRA001975CRR073297Stem 12.665
CRR073298Stem 23.469
CRR073299Stem 32.747
CRR073300Leaf 14.152
CRR073301Leaf 24.025
CRR073302Leaf 33.925
CRR073303Juvenile bud 13.505
CRR073304Juvenile bud 22.620
CRR073305Juvenile bud 31.828
CRR073306Third green 12.080
CRR073307Third green 21.918
CRR073308Third green 31.225
CRR073309Second white 11.641
CRR073310Second white 22.290
CRR073311Second white 32.042
CRR073312Silver flowering 11.338
CRR073313Silver flowering 22.818
CRR073314Silver flowering 31.556
CRR073315Gold flowering 12.828
CRR073316Gold flowering 22.580
CRR073317Gold flowering 31.539
CRR073318Tawny withering 13.897
CRR073319Tawny withering 21.689
CRR073320Tawny withering 34.001