Gene detail

Detail information of GWHGAAZE014482

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP02370.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q96502\|COL2_ARATH	2E-139	Zinc finger protein CONSTANS-LIKE 2
trEMBL	tr\|A0A068U1F8\|A0A068U1F8_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02370.1}
TAIR10	AT3G02380.1	3E-99	CONSTANS-like 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	12782749	12785316	-
GWHAAZE00000004	mRNA	12782749	12785316	-
GWHAAZE00000004	exon	12782749	12783108	-
GWHAAZE00000004	exon	12784531	12785316	-
GWHAAZE00000004	CDS	12784531	12785316	-
GWHAAZE00000004	CDS	12782749	12783108	-

Transcript Sequence
>GWHTAAZE014496 GGCATAGAGTGTGGCAATATCCCCAGTAACAATTGGGTGCGTGTGTGCGACACATGCCGGTCCGCTGCTTGCACCGTCTATTGCCGAGCCGACTCGGCCTACTTGTGCACAGGCTGTGATGCCCGCATTCACACGGCCAATCAGGTAGCATCAATGCACGAGCGCGTGTGGATATGTGAGGCATGCGAGCGCGCTCCGGCAGCCTTCATATGCAAGGCAGACGCCGCATCACTCTGCACCACTTGTGATGCTGACATCCACTCCGCCAACCCGTTGGCCCGCCGTCACCACCGCATCCCAGTTTCACCCATACCTGGCTGCCTTTTTGGGCCCCCAGCTGCCAACCCAGGAAGGTCGATAGTGGGGCTCCGAACCAAACATGTGGATGGGTTCTTGGCCCAAGAAGCAGACGAGAATATAGATGAAGACGAGGAAGACGAAACAGCTTCGTGGCTGTTACTAAATCCCGTTAAGAATAGTCACAACATCCAAGCTACTAATGGGATTATGTTTGGGGGAGAGGTGGTCGATGAGTACTTAGACCTAGTGGAGTACAATTCGTGTCAAGAGAGTCAGTTCACTACCGATGATCAGTACAATAGTCAGCACCACCAACAGTACAGTGGTGTTCCTCAGAAGAGCTATGGAGGTGATAGTGTTGTTCCAGTTCAATGTGGAGAGGTGAAAAATCATCAGCTTATGCAACAACAGCAAAATTATCAGTTGGGGATGGGATATGAGACCTCAAATACTGGTTATGGCTACCCTGCTTCAATTAGTCACAGTGTTTCAATGTCATCTATGGATGTTGGCATCGTTCCAGAATCTACAATCAGTGATGTCTCAATCTCACACCCAAGACCCCCTAAAGGGACTATTGACCTATTCTCTAGCCCTCCAATTCAGGTGCCAACTCAGCTTACGCCAATGGACAGGGAGGCCCGAGTCATCAGATACAGAGAGAAGAAGAAAATGCGCAAGTTTGAGAAAACAATAAGGTACGCATCGAGGAAAGCCTATGCAGAGACCAGACCAAGGATTAAAGGAAGGTTTGCGAAGAGAACAGATGTAGAAGTTGAAGTGGACCAGATGTTCAATACAACACTAATGGCAGAAAGTGGATATGGCATTGTCCCGTCTTTCTAA

Network for GWHGAAZE014482

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00643.25	zf-B_box	55	100	1.40E-06
PF06203.15	CCT	312	354	1.30E-16

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-CO-like

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008270	molecular_function	zinc ion binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	64.210
	SRR3591706	second leaf	211.008
	SRR3591707	mature leaf	303.318
	SRR3591708	Shoot apex	74.416
	SRR3591709	Stem	53.558
	SRR3591710	White floral bud	13.398
	SRR3591711	White flower	16.102
	SRR3591712	Green floral bud	6.802
	SRR3591713	Yellow flower	1.106
SRP173429	SRR8316895	Juvenile bud stage	30.277
	SRR8316896	Juvenile bud stage	26.972
	SRR8316897	Juvenile bud stage	10.361
	SRR8316894	Third green stage	9.329
	SRR8316900	Third green stage	13.143
	SRR8316901	Third green stage	13.518
	SRR8316898	Complete white stage	3.095
	SRR8316899	Complete white stage	35.429
	SRR8316903	Complete white stage	7.456
	SRR8316902	Silver flowering stage	0.727
	SRR8316904	Silver flowering stage	1.355
	SRR8316905	Silver flowering stage	0.573
	SRR8316906	Gold flowering stage	2.495
	SRR8316907	Gold flowering stage	1.893
	SRR8316908	Gold flowering stage	3.249
SRP132670	SRR6706286	Control	24.435
	SRR6706287	Light intensity 50%	28.121
	SRR6706288	Light intensity 20%	28.914
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	34.717
	CNS0095593	Slightly white alabastrum(diploid) 2	35.392
	CNS0095594	Slightly white alabastrum(diploid) 3	38.233
	CNS0095595	Whole white alabastrum(diploid) 2	28.494
	CNS0095596	Whole white alabastrum(diploid) 3	10.899
	CNS0095597	Whole white alabastrum(diploid) 4	16.886
	CNS0095598	Silvery flower (diploied) 1	43.171
	CNS0095599	Silvery flower (diploied) 2	51.066
	CNS0095600	Silvery flower (diploied) 3	9.066
	CNS0095601	Golden flower (diploid) 1	42.392
	CNS0095602	Golden flower (diploid) 2	21.014
	CNS0095603	Golden flower (diploid) 3	20.211
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.372
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.740
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.163
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.638
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.900
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.590
	CNS0095610	Silvery flower (tetraploid) 1	3.663
	CNS0095611	Silvery flower (tetraploid) 2	6.843
	CNS0095612	Silvery flower (tetraploid) 3	1.098
	CNS0095613	Golden flower (tetraploid) 1	1.025
	CNS0095614	Golden flower (tetraploid) 2	2.947
	CNS0095615	Golden flower (tetraploid) 3	3.137
CRA001975	CRR073297	Stem 1	38.776
	CRR073298	Stem 2	24.508
	CRR073299	Stem 3	27.565
	CRR073300	Leaf 1	21.079
	CRR073301	Leaf 2	23.064
	CRR073302	Leaf 3	18.453
	CRR073303	Juvenile bud 1	19.057
	CRR073304	Juvenile bud 2	10.227
	CRR073305	Juvenile bud 3	24.813
	CRR073306	Third green 1	14.048
	CRR073307	Third green 2	12.268
	CRR073308	Third green 3	14.088
	CRR073309	Second white 1	3.197
	CRR073310	Second white 2	2.493
	CRR073311	Second white 3	4.454
	CRR073312	Silver flowering 1	0.636
	CRR073313	Silver flowering 2	0.362
	CRR073314	Silver flowering 3	1.645
	CRR073315	Gold flowering 1	12.160
	CRR073316	Gold flowering 2	19.453
	CRR073317	Gold flowering 3	14.863
	CRR073318	Tawny withering 1	1.967
	CRR073319	Tawny withering 2	2.591
	CRR073320	Tawny withering 3	2.774