Gene detail

Detail information of GWHGAAZE014483

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002278965.1	0	PREDICTED: protein NSP-INTERACTING KINASE 1 [Vitis vinifera]
Swissprot	tr\|Q9LFS4\|NIK1_ARATH	0	Protein NSP-INTERACTING KINASE 1 (Precursor)
trEMBL	tr\|D7SMJ9\|D7SMJ9_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI16897.3}
TAIR10	AT5G16000.1	3E-152	NSP-interacting kinase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	12801843	12805507	-
GWHAAZE00000004	mRNA	12801843	12805507	-
GWHAAZE00000004	exon	12801843	12802166	-
GWHAAZE00000004	exon	12802630	12802683	-
GWHAAZE00000004	exon	12803236	12803609	-
GWHAAZE00000004	exon	12803715	12803861	-
GWHAAZE00000004	exon	12804091	12804188	-
GWHAAZE00000004	exon	12804302	12804361	-
GWHAAZE00000004	exon	12804448	12804519	-
GWHAAZE00000004	exon	12804615	12804758	-
GWHAAZE00000004	exon	12804859	12804930	-
GWHAAZE00000004	exon	12805052	12805184	-
GWHAAZE00000004	exon	12805294	12805507	-
GWHAAZE00000004	CDS	12805294	12805507	-
GWHAAZE00000004	CDS	12805052	12805184	-
GWHAAZE00000004	CDS	12804859	12804930	-
GWHAAZE00000004	CDS	12804615	12804758	-
GWHAAZE00000004	CDS	12804448	12804519	-
GWHAAZE00000004	CDS	12804302	12804361	-
GWHAAZE00000004	CDS	12804091	12804188	-
GWHAAZE00000004	CDS	12803715	12803861	-
GWHAAZE00000004	CDS	12803236	12803609	-
GWHAAZE00000004	CDS	12802630	12802683	-
GWHAAZE00000004	CDS	12801843	12802166	-

Transcript Sequence
>GWHTAAZE014497 AAAAGAAAAGCCATTGAAATTGAAGCCTGGTCTTCAAATTACCTTCATCACTCACAATTACCAGGTTTTATCTTCTGGGTATCTTTTATTCTTTTGAATACTAATAATATCTCCATGAAAACCAAAAGAGAGACAACGTTCTGGTTTTTGACATTTTTGTGGCTTTGGAGCTGGGCCAATGGTTTGCTCTCTCCCAAAGGTGTAAACTTTGAAGTGCAAGCTTTAATGAGTATAAAAGCTTCTTTGGAGGATCCTCATGGGGTTCTTGATAACTGGGATGGAGATTCTGTTGATCCTTGTAGCTGGACAATGGTCACTTGTTCTGCAGAGAGTTTTGTAATTGGCCTTGGCACTCCAAGCCAGAACTTATCTGGCACTCTTTCTCCAAGCATTGCCAACTTAACTTATCTCCAGATTGTGCTCTTACAGAACAACAACATAACAGGACCAATCCCAGCAGAGCTAGGGAGGCTGAGGAAGCTTCAAACACTAGATCTCTCTGATAATATATTCACTGGTGAAATTCCCTCTTCTCTAGGTCACTTAAAAGGCCTCCAATACTTGAGGCTCAACAATAACAGTCTTTACGGACCGATCCCCGAATCCTTGGCCAGCATGACCCAGCTTTCCTTTCTAGACTTGTCTTACAATAACTTGAGTGGCCCTGTACCCCGGTTTCCTTCGAAGACATTCAGCATTGTTGGGAACCCCCTTGTATGCGCAACAGGATCTGAGCCTCAATGCTATGGAATGACTCTAATGCCAATGTCCATGCCCTTGAATAATTCTCAAACTGCTCAGTCTTTGGGTAAACGAAAAAGTCACAAGCTTGCAACTGCCCTTGCTACAAGCCTTGGATGCATCTGTTTGCTCGTCCTTGGATTCGGGATTCTTTGGTGGAGACAAAGTCGAAACAAGCTGCCCTTCTTTGATGTTGAAGAGCGACATCACAAGGATGTTTCCCTTGGAAATTTAAGGAGATTCCAATTCAAGGAACTTCAAATTGCGACCGACAACTTCAGCAGTAAAAAATTACTGGGAAAAGGAGGTTTTGGAAATGTGTACAAGGGAAATCTACAAGATGGAACTACTGTGGCAGTAAAAAGGCTCAAAGACGGCAGCACAATTGGAGGAGAAAGGCAGTTCCAAACAGAAGTAGAGATGATCAGCTTAGCGGTGCACCGGAACCTTCTCAGGCTATATGGCTTTTGTATGACTCCCACAGAAAAGCTATTAGTCTATCCCTATATGTCCAACGGCAGTGTCGCTTCACGTCTCAAAAGTAATATAATTGTGCACACATTGCATATTTATAGAGCTCTACAATTTGGCAAGGCAGCTAACCAGAAAGGATCAATGCTTGACTGGGTGAAAAAAATTCATCAAGAGAAGAAACTTGATATCCTTGTGGATAAGGATTTGAAGAAAAACTATGATCTAATTGAACTGGAAGAAATTGTTAGAGTGGCTCTATTGTGCACACAATACCTCCCGGGCCAAAGGCCTAAGATGTGTGAAGTGGTTCGAATGCTCGAAGGGGATGGAATTGCAGAGAGATGGGAAGCTTCTCAAAGAGTTGAAGCAACAACAAAGAATAAAACAAAAGAGCTTTCCTCATCGGATCGATACTCTGACCTCACCGATGATTCCTCGTTACTGGTTCAAGCAATAGAGCTTTCTGGCCCGAGGTGA

Network for GWHGAAZE014483

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	71	108	7.40E-14
PF13855.7	LRR_8	159	219	2.60E-09
PF07714.18	PK_Tyr_Ser-Thr	343	447	3.60E-15

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-II

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.499
	SRR3591706	second leaf	42.671
	SRR3591707	mature leaf	41.843
	SRR3591708	Shoot apex	20.413
	SRR3591709	Stem	26.706
	SRR3591710	White floral bud	28.776
	SRR3591711	White flower	24.127
	SRR3591712	Green floral bud	18.520
	SRR3591713	Yellow flower	10.189
SRP173429	SRR8316895	Juvenile bud stage	10.486
	SRR8316896	Juvenile bud stage	15.637
	SRR8316897	Juvenile bud stage	4.363
	SRR8316894	Third green stage	6.403
	SRR8316900	Third green stage	14.914
	SRR8316901	Third green stage	12.924
	SRR8316898	Complete white stage	11.907
	SRR8316899	Complete white stage	15.471
	SRR8316903	Complete white stage	15.960
	SRR8316902	Silver flowering stage	3.904
	SRR8316904	Silver flowering stage	6.840
	SRR8316905	Silver flowering stage	2.843
	SRR8316906	Gold flowering stage	4.457
	SRR8316907	Gold flowering stage	7.145
	SRR8316908	Gold flowering stage	6.505
SRP132670	SRR6706286	Control	10.098
	SRR6706287	Light intensity 50%	10.842
	SRR6706288	Light intensity 20%	11.125
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.246
	CNS0095593	Slightly white alabastrum(diploid) 2	7.153
	CNS0095594	Slightly white alabastrum(diploid) 3	9.600
	CNS0095595	Whole white alabastrum(diploid) 2	5.395
	CNS0095596	Whole white alabastrum(diploid) 3	4.129
	CNS0095597	Whole white alabastrum(diploid) 4	4.430
	CNS0095598	Silvery flower (diploied) 1	9.317
	CNS0095599	Silvery flower (diploied) 2	7.422
	CNS0095600	Silvery flower (diploied) 3	10.516
	CNS0095601	Golden flower (diploid) 1	5.876
	CNS0095602	Golden flower (diploid) 2	6.449
	CNS0095603	Golden flower (diploid) 3	5.712
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.416
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.929
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.034
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.820
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.393
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.215
	CNS0095610	Silvery flower (tetraploid) 1	11.553
	CNS0095611	Silvery flower (tetraploid) 2	9.448
	CNS0095612	Silvery flower (tetraploid) 3	7.066
	CNS0095613	Golden flower (tetraploid) 1	3.915
	CNS0095614	Golden flower (tetraploid) 2	6.959
	CNS0095615	Golden flower (tetraploid) 3	4.060
CRA001975	CRR073297	Stem 1	31.995
	CRR073298	Stem 2	28.641
	CRR073299	Stem 3	36.190
	CRR073300	Leaf 1	23.894
	CRR073301	Leaf 2	21.092
	CRR073302	Leaf 3	20.189
	CRR073303	Juvenile bud 1	16.879
	CRR073304	Juvenile bud 2	19.299
	CRR073305	Juvenile bud 3	28.585
	CRR073306	Third green 1	11.337
	CRR073307	Third green 2	14.416
	CRR073308	Third green 3	11.278
	CRR073309	Second white 1	5.876
	CRR073310	Second white 2	6.773
	CRR073311	Second white 3	3.537
	CRR073312	Silver flowering 1	1.690
	CRR073313	Silver flowering 2	1.746
	CRR073314	Silver flowering 3	0.603
	CRR073315	Gold flowering 1	6.492
	CRR073316	Gold flowering 2	11.092
	CRR073317	Gold flowering 3	6.081
	CRR073318	Tawny withering 1	26.157
	CRR073319	Tawny withering 2	12.502
	CRR073320	Tawny withering 3	20.290