Gene detail

Detail information of GWHGAAZE014495

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP02388.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9LFT0\|TBL19_ARATH	2E-141	Protein trichome birefringence-like 19
trEMBL	tr\|A0A068U446\|A0A068U446_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02388.1}
TAIR10	AT5G15900.1	2E-115	TRICHOME BIREFRINGENCE-LIKE 19

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	12925216	12926595	-
GWHAAZE00000004	mRNA	12925216	12926595	-
GWHAAZE00000004	exon	12926204	12926595	-
GWHAAZE00000004	exon	12925216	12925987	-
GWHAAZE00000004	five_prime_UTR	12926525	12926595	-
GWHAAZE00000004	CDS	12926204	12926524	-
GWHAAZE00000004	CDS	12925229	12925987	-
GWHAAZE00000004	three_prime_UTR	12925216	12925228	-

Transcript Sequence
>GWHTAAZE014509 TAACCACAACCCCTCTCTATCTGTACAAAAATTCTTCACCGAAGATTATTATCGACGGTTCATTTCCTTACATGAAAAATCCATATGAATCCGCTAGCAGGATAAGAATTGAGCATAAATGTGACATATTTAGTGGAACTTGGATTCCATACCCCAATGGGCCATATTACACGAATACGAGTAAATGTGTGATTGATGATCGACAGAACTGCATGAAGTTTGGGAGGCCAGATACACAGTTTATGAAGTGGAGGTGGAAACCAGATGAATGTGAGCTACCACTTTTTGATGCAGTCCAGTTCTTGGAACTTGTTAGAGGGAAGTCCATGGCCTTTGTTGGGGACTCATTAGCAAGAAATCAAATGCAGTCTTTGGTGTGCTTATTGGCTAGTGTGGTTAATCCAGTCGACGTATCATATATTCAAGACACAAGATTCAGACGATGGCTCTATGCGGACTACAAATTCACGCTTGTAGCTTTGTGGTCCACTCACTTGATTAAATCACAAGAAGCTGACCCAAATGGCTATTCTCTCAATAGCCTAATGAGTCTCTACTTAGACAAGGCTGATGAAGGCTGGGCTGCCCAGGTTGAACATTTCGATTATGTGATCATCTCGGCCGGACCATGGTTCTCTAGACCATTTATGTACTTCGAAAATGGTGAAATTATTGGGTGCCACAATTGCCATATAGAGAACATCACAAGACTTAGTAGGTACTATGGCTACAAAATGGCATTTCGAACCGCCTTTCGGACCCTTTTGAGGCTTCCAAAATTCAAGGGGGTGACCTTCCTAAGGGCATTTTCACCCCCGCATTACGAGAATGGGGAATGGAATAAAGGAGGGAATTGTGTGAGGAAAAAGCCATTTACTAAGGAGGAAATGAAAATAGATGGATATATTATGGAGTTTTATTTGACACAAGTGGAAGAATTAAGGGCAGCACGAAGAGAAGGGAGGAAGAAAGGGTTGAGGTTTAGGTTATTAGATACTATTGAGGCCATGCTGGCGAGACCAGATGGTCATCCTAACCATTATGGGCATTGGGCTCATGAGAATGTGACCGTAGCTGATTGTGTACATTGGTGCTTGCCTGGTCCAATTGACATTTGGAATGAGTTTTTGCTTCATATGTTGAAGACTTGAAGTTGGAAGGGGG

Network for GWHGAAZE014495

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0222

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14416.7	PMR5N	16	68	5.40E-19
PF13839.7	PC-Esterase	69	356	8.70E-89

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.814
	SRR3591706	second leaf	0.653
	SRR3591707	mature leaf	0.143
	SRR3591708	Shoot apex	0.799
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.505
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.647
	SRR8316896	Juvenile bud stage	1.754
	SRR8316897	Juvenile bud stage	0.385
	SRR8316894	Third green stage	0.688
	SRR8316900	Third green stage	0.133
	SRR8316901	Third green stage	0.300
	SRR8316898	Complete white stage	0.074
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.113
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.003
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.289
	SRR6706287	Light intensity 50%	0.309
	SRR6706288	Light intensity 20%	0.251
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.921
	CNS0095593	Slightly white alabastrum(diploid) 2	1.105
	CNS0095594	Slightly white alabastrum(diploid) 3	0.720
	CNS0095595	Whole white alabastrum(diploid) 2	0.147
	CNS0095596	Whole white alabastrum(diploid) 3	0.434
	CNS0095597	Whole white alabastrum(diploid) 4	0.039
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.135
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.185
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.254
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.934
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.207
	CNS0095610	Silvery flower (tetraploid) 1	0.033
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.692
	CRR073298	Stem 2	1.219
	CRR073299	Stem 3	2.605
	CRR073300	Leaf 1	0.065
	CRR073301	Leaf 2	0.504
	CRR073302	Leaf 3	1.276
	CRR073303	Juvenile bud 1	0.044
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.003
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.005
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.370
	CRR073317	Gold flowering 3	0.044
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000