Detail information of GWHGAAZE014501


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007032645.12.84807E-75S locus F-box protein with the low allelic sequence polymorphism 1-S2 [Theobroma cacao]
Swissprottr|Q9SU30|CPR30_ARATH8E-35F-box protein CPR30
trEMBLtr|A0A061EF68|A0A061EF68_THECC1E-75S locus F-box protein with the low allelic sequence polymorphism 1-S2 {ECO:0000313|EMBL:EOY03571.1}
TAIR10AT4G12560.22E-31F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene1298562612986735-
GWHAAZE00000004mRNA1298562612986735-
GWHAAZE00000004exon1298562612986735-
GWHAAZE00000004CDS1298562612986735-
Transcript Sequence

Network for GWHGAAZE014501

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box6441.60E-07
PF07734.14FBA_12103362.80E-09
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.174
SRR3591706second leaf1.449
SRR3591707mature leaf0.805
SRR3591708Shoot apex1.315
SRR3591709Stem0.297
SRR3591710White floral bud0.070
SRR3591711White flower0.135
SRR3591712Green floral bud0.000
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 4.395
SRR8316896Juvenile bud stage 5.217
SRR8316897Juvenile bud stage 3.159
SRR8316894Third green stage 2.837
SRR8316900Third green stage 7.076
SRR8316901Third green stage 5.355
SRR8316898Complete white stage 5.731
SRR8316899Complete white stage 12.206
SRR8316903Complete white stage 6.730
SRR8316902Silver flowering stage4.220
SRR8316904Silver flowering stage6.586
SRR8316905Silver flowering stage3.407
SRR8316906Gold flowering stage 10.898
SRR8316907Gold flowering stage 10.525
SRR8316908Gold flowering stage 17.459
SRP132670SRR6706286Control2.476
SRR6706287Light intensity 50%2.963
SRR6706288Light intensity 20%2.958
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.211
CNS0095593Slightly white alabastrum(diploid) 25.572
CNS0095594Slightly white alabastrum(diploid) 33.768
CNS0095595Whole white alabastrum(diploid) 25.500
CNS0095596Whole white alabastrum(diploid) 35.017
CNS0095597Whole white alabastrum(diploid) 43.231
CNS0095598Silvery flower (diploied) 17.170
CNS0095599Silvery flower (diploied) 27.434
CNS0095600Silvery flower (diploied) 312.220
CNS0095601Golden flower (diploid) 16.496
CNS0095602Golden flower (diploid) 29.539
CNS0095603Golden flower (diploid) 39.228
CNS0095604Slightly white alabastrum(tetraploid) 15.211
CNS0095605Slightly white alabastrum(tetraploid) 23.113
CNS0095606Slightly white alabastrum(tetraploid) 38.021
CNS0095607Whole white alabastrum(tetraploid) 13.544
CNS0095608Whole white alabastrum(tetraploid) 24.424
CNS0095609Whole white alabastrum(tetraploid) 35.262
CNS0095610Silvery flower (tetraploid) 112.584
CNS0095611Silvery flower (tetraploid) 212.849
CNS0095612Silvery flower (tetraploid) 313.997
CNS0095613Golden flower (tetraploid) 18.517
CNS0095614Golden flower (tetraploid) 29.604
CNS0095615Golden flower (tetraploid) 318.079
CRA001975CRR073297Stem 11.826
CRR073298Stem 21.747
CRR073299Stem 32.215
CRR073300Leaf 12.288
CRR073301Leaf 21.683
CRR073302Leaf 32.283
CRR073303Juvenile bud 13.128
CRR073304Juvenile bud 22.140
CRR073305Juvenile bud 32.583
CRR073306Third green 12.009
CRR073307Third green 23.716
CRR073308Third green 33.139
CRR073309Second white 14.094
CRR073310Second white 22.586
CRR073311Second white 33.020
CRR073312Silver flowering 12.961
CRR073313Silver flowering 23.370
CRR073314Silver flowering 33.353
CRR073315Gold flowering 11.716
CRR073316Gold flowering 21.009
CRR073317Gold flowering 31.431
CRR073318Tawny withering 12.928
CRR073319Tawny withering 22.275
CRR073320Tawny withering 31.942