Detail information of GWHGAAZE014502


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrBAQ18981.11.99848E-59S17-locus linked F-box protein type-9 B [Petunia axillaris subsp. axillaris]
Swissprottr|Q9SU30|CPR30_ARATH3E-31F-box protein CPR30
trEMBLtr|A0A061EF68|A0A061EF68_THECC3E-58S locus F-box protein with the low allelic sequence polymorphism 1-S2 {ECO:0000313|EMBL:EOY03571.1}
TAIR10AT4G12560.24E-28F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene1300087513002081-
GWHAAZE00000004mRNA1300087513002081-
GWHAAZE00000004exon1300087513000943-
GWHAAZE00000004exon1300118513002081-
GWHAAZE00000004CDS1300118513002081-
GWHAAZE00000004CDS1300087513000943-
Transcript Sequence

Network for GWHGAAZE014502

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box6441.30E-07
PF07734.14FBA_12103072.20E-09
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.293
SRR3591706second leaf1.165
SRR3591707mature leaf0.281
SRR3591708Shoot apex1.118
SRR3591709Stem0.117
SRR3591710White floral bud0.006
SRR3591711White flower0.000
SRR3591712Green floral bud0.000
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.827
SRR8316896Juvenile bud stage 2.247
SRR8316897Juvenile bud stage 0.865
SRR8316894Third green stage 0.845
SRR8316900Third green stage 1.503
SRR8316901Third green stage 1.277
SRR8316898Complete white stage 0.681
SRR8316899Complete white stage 1.836
SRR8316903Complete white stage 1.166
SRR8316902Silver flowering stage0.452
SRR8316904Silver flowering stage0.782
SRR8316905Silver flowering stage0.472
SRR8316906Gold flowering stage 1.448
SRR8316907Gold flowering stage 1.176
SRR8316908Gold flowering stage 3.950
SRP132670SRR6706286Control0.168
SRR6706287Light intensity 50%0.182
SRR6706288Light intensity 20%0.137
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.947
CNS0095593Slightly white alabastrum(diploid) 21.344
CNS0095594Slightly white alabastrum(diploid) 31.278
CNS0095595Whole white alabastrum(diploid) 21.009
CNS0095596Whole white alabastrum(diploid) 31.552
CNS0095597Whole white alabastrum(diploid) 40.844
CNS0095598Silvery flower (diploied) 11.011
CNS0095599Silvery flower (diploied) 21.509
CNS0095600Silvery flower (diploied) 31.860
CNS0095601Golden flower (diploid) 11.144
CNS0095602Golden flower (diploid) 21.182
CNS0095603Golden flower (diploid) 31.398
CNS0095604Slightly white alabastrum(tetraploid) 11.373
CNS0095605Slightly white alabastrum(tetraploid) 21.048
CNS0095606Slightly white alabastrum(tetraploid) 31.405
CNS0095607Whole white alabastrum(tetraploid) 10.553
CNS0095608Whole white alabastrum(tetraploid) 21.374
CNS0095609Whole white alabastrum(tetraploid) 31.191
CNS0095610Silvery flower (tetraploid) 12.176
CNS0095611Silvery flower (tetraploid) 21.829
CNS0095612Silvery flower (tetraploid) 32.571
CNS0095613Golden flower (tetraploid) 11.803
CNS0095614Golden flower (tetraploid) 21.689
CNS0095615Golden flower (tetraploid) 33.535
CRA001975CRR073297Stem 10.501
CRR073298Stem 20.565
CRR073299Stem 30.363
CRR073300Leaf 10.275
CRR073301Leaf 20.707
CRR073302Leaf 30.332
CRR073303Juvenile bud 10.747
CRR073304Juvenile bud 20.827
CRR073305Juvenile bud 30.456
CRR073306Third green 10.492
CRR073307Third green 20.780
CRR073308Third green 30.642
CRR073309Second white 10.507
CRR073310Second white 20.723
CRR073311Second white 30.504
CRR073312Silver flowering 10.904
CRR073313Silver flowering 20.920
CRR073314Silver flowering 30.334
CRR073315Gold flowering 10.105
CRR073316Gold flowering 20.081
CRR073317Gold flowering 30.398
CRR073318Tawny withering 10.355
CRR073319Tawny withering 20.697
CRR073320Tawny withering 30.311