Gene detail

Detail information of GWHGAAZE014507

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009598068.1	2.38868E-53	PREDICTED: probable histone acetyltransferase HAC-like 1 isoform X1 [Nicotiana tomentosiformis]
Swissprot	tr\|Q6YXY2\|HACL1_ORYSJ	6E-49	Probable histone acetyltransferase HAC-like 1
trEMBL	tr\|K4BCD0\|K4BCD0_SOLLC	1E-53	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc02g089790.2.1}
TAIR10	AT1G16710.2	4E-42	histone acetyltransferase of the CBP family 12

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	13100301	13101841	+
GWHAAZE00000004	mRNA	13100301	13101841	+
GWHAAZE00000004	exon	13100301	13100378	+
GWHAAZE00000004	exon	13100530	13100781	+
GWHAAZE00000004	exon	13101393	13101619	+
GWHAAZE00000004	exon	13101752	13101841	+
GWHAAZE00000004	CDS	13100301	13100378	+
GWHAAZE00000004	CDS	13100530	13100781	+
GWHAAZE00000004	CDS	13101393	13101619	+
GWHAAZE00000004	CDS	13101752	13101836	+
GWHAAZE00000004	three_prime_UTR	13101837	13101841	+

Transcript Sequence
>GWHTAAZE014521 TGTCTTGATTCTCAAAAAGATGTTGACAGTGAGAAAAAACACACATCCACTACTGGTGAAAAACATCCTCTCGTTCAGGTTTTGGTGAATGATATACCTCTTGATACGGAGGATAAAGATGTCACTCTCAAAAATGAATTCTTCGATGATAGAAATACTTTCTTGAGCTTCTGTCAGGAAAATCATTATCAGTTTGATACACTTCACCATGCAAAGCATTCCTCGATGATGATCGTGGATCAACTTCACAAGAATACTAAACTTACTGGTGGTCCCACCTCCAGCGTTTGTCACAAGGATGTTACTGCAGAGGATCGGCTACGTTGCGAGGTACGGGAAATACTGAGTGTTTTAAAACACACCTTTCAGTGCAATCCAACAGAAAGCAATCCATGTGTCTATCCTAAGTGCCGCAAAATTAGGCTGCTTTTCCGCCACACAAGCCAGTGCAATGTTCGAGCTGCCGGGGGTTGTCCACCCTGTCGGAGAGTTTGGGAAATATTGGTATTTCACTCAAAAACCTGTGGAGAATCGGATTGCAAAATACCAAGATGCATGGATCTTAAGAAGCACAGGGAAATGCATAATTCCTTGTCCAAACCTCCGCAAAAAGTTGCAGTTGCAGGTTTAGCAAGCGCTTGAGGTTA

Network for GWHGAAZE014507

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02135.17	zf-TAZ	112	185	6.90E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	TAZ

KEGG pathway

KO	Enzyme	pathway	mapID
K04498	EP300, CREBBP, KAT3	Wnt signaling pathway	map04310
		Notch signaling pathway	map04330
		TGF-beta signaling pathway	map04350
		JAK-STAT signaling pathway	map04630
		HIF-1 signaling pathway	map04066
		FoxO signaling pathway	map04068
		cAMP signaling pathway	map04024
		Cell cycle	map04110
		Adherens junction	map04520
		Glucagon signaling pathway	map04922
		Growth hormone synthesis, secretion and action	map04935
		Thyroid hormone signaling pathway	map04919
		Melanogenesis	map04916
		Long-term potentiation	map04720

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0005634	cellular_component	nucleus
GO:0003712	molecular_function	transcription coregulator activity
GO:0004402	molecular_function	histone acetyltransferase activity
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.745
	SRR3591706	second leaf	0.132
	SRR3591707	mature leaf	0.468
	SRR3591708	Shoot apex	0.543
	SRR3591709	Stem	1.437
	SRR3591710	White floral bud	2.174
	SRR3591711	White flower	2.979
	SRR3591712	Green floral bud	2.466
	SRR3591713	Yellow flower	2.424
SRP173429	SRR8316895	Juvenile bud stage	0.741
	SRR8316896	Juvenile bud stage	2.112
	SRR8316897	Juvenile bud stage	0.467
	SRR8316894	Third green stage	0.606
	SRR8316900	Third green stage	2.631
	SRR8316901	Third green stage	2.664
	SRR8316898	Complete white stage	0.935
	SRR8316899	Complete white stage	2.171
	SRR8316903	Complete white stage	1.062
	SRR8316902	Silver flowering stage	1.385
	SRR8316904	Silver flowering stage	1.593
	SRR8316905	Silver flowering stage	0.694
	SRR8316906	Gold flowering stage	2.240
	SRR8316907	Gold flowering stage	0.658
	SRR8316908	Gold flowering stage	0.671
SRP132670	SRR6706286	Control	1.302
	SRR6706287	Light intensity 50%	1.936
	SRR6706288	Light intensity 20%	2.060
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.069
	CNS0095593	Slightly white alabastrum(diploid) 2	1.599
	CNS0095594	Slightly white alabastrum(diploid) 3	4.154
	CNS0095595	Whole white alabastrum(diploid) 2	5.318
	CNS0095596	Whole white alabastrum(diploid) 3	4.502
	CNS0095597	Whole white alabastrum(diploid) 4	5.708
	CNS0095598	Silvery flower (diploied) 1	1.663
	CNS0095599	Silvery flower (diploied) 2	3.126
	CNS0095600	Silvery flower (diploied) 3	4.211
	CNS0095601	Golden flower (diploid) 1	3.054
	CNS0095602	Golden flower (diploid) 2	2.911
	CNS0095603	Golden flower (diploid) 3	1.775
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.803
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.432
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.006
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.805
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.938
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.071
	CNS0095610	Silvery flower (tetraploid) 1	1.227
	CNS0095611	Silvery flower (tetraploid) 2	1.058
	CNS0095612	Silvery flower (tetraploid) 3	0.619
	CNS0095613	Golden flower (tetraploid) 1	1.131
	CNS0095614	Golden flower (tetraploid) 2	0.911
	CNS0095615	Golden flower (tetraploid) 3	0.254
CRA001975	CRR073297	Stem 1	1.287
	CRR073298	Stem 2	1.642
	CRR073299	Stem 3	0.130
	CRR073300	Leaf 1	3.940
	CRR073301	Leaf 2	2.773
	CRR073302	Leaf 3	0.893
	CRR073303	Juvenile bud 1	2.039
	CRR073304	Juvenile bud 2	1.464
	CRR073305	Juvenile bud 3	1.150
	CRR073306	Third green 1	0.565
	CRR073307	Third green 2	1.314
	CRR073308	Third green 3	0.325
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.827
	CRR073311	Second white 3	0.614
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.728
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.285
	CRR073318	Tawny withering 1	1.184
	CRR073319	Tawny withering 2	1.506
	CRR073320	Tawny withering 3	3.338