Detail information of GWHGAAZE014527


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP02419.10unnamed protein product [Coffea canephora]
Swissprottr|Q8W4F0|DAR1_ARATH0Protein DA1-related 1
trEMBLtr|A0A068U2L7|A0A068U2L7_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313|EMBL:CDP02419.1}
TAIR10AT4G36860.10LIM domain-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene1339888113402383-
GWHAAZE00000004mRNA1339888113402383-
GWHAAZE00000004exon1339888113399227-
GWHAAZE00000004exon1339971513399773-
GWHAAZE00000004exon1339986513399983-
GWHAAZE00000004exon1340009113400153-
GWHAAZE00000004exon1340024013400452-
GWHAAZE00000004exon1340062613400745-
GWHAAZE00000004exon1340098413401067-
GWHAAZE00000004exon1340119613401316-
GWHAAZE00000004exon1340139813401533-
GWHAAZE00000004exon1340199713402171-
GWHAAZE00000004exon1340227313402383-
GWHAAZE00000004CDS1340227313402383-
GWHAAZE00000004CDS1340199713402171-
GWHAAZE00000004CDS1340139813401533-
GWHAAZE00000004CDS1340119613401316-
GWHAAZE00000004CDS1340098413401067-
GWHAAZE00000004CDS1340062613400745-
GWHAAZE00000004CDS1340024013400452-
GWHAAZE00000004CDS1340009113400153-
GWHAAZE00000004CDS1339986513399983-
GWHAAZE00000004CDS1339971513399773-
GWHAAZE00000004CDS1339888113399227-
Transcript Sequence

Network for GWHGAAZE014527

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00412.23LIM1431983.90E-10
PF12315.9DA1-like2925103.10E-105
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyOthers

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf38.480
SRR3591706second leaf36.416
SRR3591707mature leaf34.324
SRR3591708Shoot apex12.702
SRR3591709Stem136.544
SRR3591710White floral bud54.912
SRR3591711White flower58.807
SRR3591712Green floral bud27.268
SRR3591713Yellow flower61.571
SRP173429 SRR8316895Juvenile bud stage 18.220
SRR8316896Juvenile bud stage 23.499
SRR8316897Juvenile bud stage 7.639
SRR8316894Third green stage 8.742
SRR8316900Third green stage 30.151
SRR8316901Third green stage 29.042
SRR8316898Complete white stage 29.231
SRR8316899Complete white stage 49.219
SRR8316903Complete white stage 49.374
SRR8316902Silver flowering stage43.792
SRR8316904Silver flowering stage56.475
SRR8316905Silver flowering stage26.884
SRR8316906Gold flowering stage 82.355
SRR8316907Gold flowering stage 80.662
SRR8316908Gold flowering stage 90.120
SRP132670SRR6706286Control27.557
SRR6706287Light intensity 50%29.008
SRR6706288Light intensity 20%28.872
CNP0000432CNS0095592Slightly white alabastrum(diploid) 115.099
CNS0095593Slightly white alabastrum(diploid) 214.916
CNS0095594Slightly white alabastrum(diploid) 319.393
CNS0095595Whole white alabastrum(diploid) 215.384
CNS0095596Whole white alabastrum(diploid) 316.301
CNS0095597Whole white alabastrum(diploid) 419.260
CNS0095598Silvery flower (diploied) 127.282
CNS0095599Silvery flower (diploied) 228.343
CNS0095600Silvery flower (diploied) 375.209
CNS0095601Golden flower (diploid) 128.270
CNS0095602Golden flower (diploid) 264.621
CNS0095603Golden flower (diploid) 358.877
CNS0095604Slightly white alabastrum(tetraploid) 118.392
CNS0095605Slightly white alabastrum(tetraploid) 216.814
CNS0095606Slightly white alabastrum(tetraploid) 325.816
CNS0095607Whole white alabastrum(tetraploid) 117.403
CNS0095608Whole white alabastrum(tetraploid) 214.821
CNS0095609Whole white alabastrum(tetraploid) 325.326
CNS0095610Silvery flower (tetraploid) 190.113
CNS0095611Silvery flower (tetraploid) 283.628
CNS0095612Silvery flower (tetraploid) 396.527
CNS0095613Golden flower (tetraploid) 159.345
CNS0095614Golden flower (tetraploid) 279.341
CNS0095615Golden flower (tetraploid) 375.862
CRA001975CRR073297Stem 141.690
CRR073298Stem 231.824
CRR073299Stem 324.276
CRR073300Leaf 142.906
CRR073301Leaf 237.277
CRR073302Leaf 328.141
CRR073303Juvenile bud 144.057
CRR073304Juvenile bud 239.946
CRR073305Juvenile bud 352.765
CRR073306Third green 193.291
CRR073307Third green 270.496
CRR073308Third green 386.196
CRR073309Second white 171.583
CRR073310Second white 279.902
CRR073311Second white 376.434
CRR073312Silver flowering 166.221
CRR073313Silver flowering 255.931
CRR073314Silver flowering 347.346
CRR073315Gold flowering 125.588
CRR073316Gold flowering 227.508
CRR073317Gold flowering 320.029
CRR073318Tawny withering 152.843
CRR073319Tawny withering 247.561
CRR073320Tawny withering 348.345