Gene detail

Detail information of GWHGAAZE014541

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009789530.1	0	PREDICTED: myosin heavy chain kinase B [Nicotiana sylvestris]
Swissprot	tr\|Q0DYP5\|C3H17_ORYSJ	4E-13	Zinc finger CCCH domain-containing protein 17
trEMBL	tr\|A5AKX8\|A5AKX8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN66843.1}
TAIR10	AT3G50390.1	5E-135	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	13651263	13652387	+
GWHAAZE00000004	mRNA	13651263	13652387	+
GWHAAZE00000004	exon	13651263	13652387	+
GWHAAZE00000004	CDS	13651263	13652387	+

Transcript Sequence
>GWHTAAZE014555 ATGGGATCCCTTGTTCGCGAAGAAGGACATATATATTCATTGGCTGCTTGTGGTGATTTGTTGTATACGGGATCCGATAGCAAAAACATTCGAGTCTGGAAGAATCAGAAGGAGTTTTCGGGATTCAAATCTAACAGCGGATTGGTCAAAGCCATTGTAATTGCTGGCGAAAGGATTTTCACTGGTCACCAAGATGGCAAAATTCGCGTCTGGAAGGTTTCTTCCAAAAATCCCGGTGTACACAAACGCATTGGAACCATGCCTACTTTGAAGGCATTTTTAAAAAGCTCGATCAATCCGAGCAATTACGTTGAAGTAAGAAAGAACCGCAATGCCGTCTGGATCAAACATTTCGATGCGATATCTTCTTTAAGTTTAAGCGAAGATCAAAGCCTTTTATACTCCGCCTCTTGGGATAAAACAATTAAAGTATGGCGAGCAACTGATTCGAAATGCTTAGAGTCAATTAATGTTCATGATGATGCAGTTAACTCTGTAGTCGCGGGATTTGACGGACTAGTGTTCTCTGGATCAGCGGACGGGACTGTAAAAGTATGGCGAAGAGAGTTGCAAGGGAAAGGAACGAAGCATTTTTTTTCGCAGACATTGTTAAAGCAGGAATGCGCAGTGACTGCAGTGGCAGTGGATCCGTCTTCATTGGTGTTGTACTGTGGATCGTCTGACGGACTTGTGAATTTTTGGTTGAGAGATAAGCTTCTATCACACGGTGGAGTTTTGAGGGGCCATAAACTGGCGGTTCTGTGTTTGGCTACTGCGGGGAATTTGGTTTTCAGTGGATCTGCGGATACTAATATATGCGTGTGGAGGAGAGGGGAGATGGATCATGTGTGCTTGTCCGTACTGAATGGGCACAGTGGACCGGTGAAGTGTTTGGCGGTAGAGGAAGATCGGGAGGTGAGTGGTAGTAATCGGCGGTGGATAGTTTATAGCGGGAGTTTAGACAAGTCGGTGAAGATATGGAGAGTGTCAGCACAAATGCCTCCGATGATGCAAACTCAGAAGCAACATCATACGGATGGGTTGAACTCTCCGCACACAGTTAGGATCCCATCTACGCATAGCTACGTTTCGCAAGGTAGTAAAATGACGAGCCAAAGAATGTAG

Network for GWHGAAZE014541

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	8	34	0.094
PF00400.33	WD40	116	145	0.00036
PF00400.33	WD40	151	186	0.0032
PF00400.33	WD40	204	234	0.067
PF00400.33	WD40	244	275	0.024
PF00400.33	WD40	284	327	3.40E-05

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.114
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	4.336
	SRR3591711	White flower	0.408
	SRR3591712	Green floral bud	11.714
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.129
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.241
	SRR8316900	Third green stage	15.366
	SRR8316901	Third green stage	14.737
	SRR8316898	Complete white stage	0.076
	SRR8316899	Complete white stage	0.117
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.110
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.055
	SRR8316906	Gold flowering stage	0.134
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	5.057
	SRR6706287	Light intensity 50%	5.280
	SRR6706288	Light intensity 20%	5.154
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.988
	CNS0095593	Slightly white alabastrum(diploid) 2	6.658
	CNS0095594	Slightly white alabastrum(diploid) 3	4.032
	CNS0095595	Whole white alabastrum(diploid) 2	22.489
	CNS0095596	Whole white alabastrum(diploid) 3	31.470
	CNS0095597	Whole white alabastrum(diploid) 4	30.711
	CNS0095598	Silvery flower (diploied) 1	0.654
	CNS0095599	Silvery flower (diploied) 2	1.108
	CNS0095600	Silvery flower (diploied) 3	0.738
	CNS0095601	Golden flower (diploid) 1	0.556
	CNS0095602	Golden flower (diploid) 2	0.251
	CNS0095603	Golden flower (diploid) 3	0.502
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.003
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.039
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.046
	CNS0095607	Whole white alabastrum(tetraploid) 1	36.788
	CNS0095608	Whole white alabastrum(tetraploid) 2	34.703
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.013
	CNS0095610	Silvery flower (tetraploid) 1	0.230
	CNS0095611	Silvery flower (tetraploid) 2	0.513
	CNS0095612	Silvery flower (tetraploid) 3	2.063
	CNS0095613	Golden flower (tetraploid) 1	0.434
	CNS0095614	Golden flower (tetraploid) 2	0.060
	CNS0095615	Golden flower (tetraploid) 3	0.389
CRA001975	CRR073297	Stem 1	0.143
	CRR073298	Stem 2	0.315
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	10.776
	CRR073301	Leaf 2	7.611
	CRR073302	Leaf 3	3.413
	CRR073303	Juvenile bud 1	5.006
	CRR073304	Juvenile bud 2	6.596
	CRR073305	Juvenile bud 3	0.532
	CRR073306	Third green 1	1.779
	CRR073307	Third green 2	2.758
	CRR073308	Third green 3	2.371
	CRR073309	Second white 1	0.263
	CRR073310	Second white 2	0.439
	CRR073311	Second white 3	0.446
	CRR073312	Silver flowering 1	2.320
	CRR073313	Silver flowering 2	1.523
	CRR073314	Silver flowering 3	1.525
	CRR073315	Gold flowering 1	4.005
	CRR073316	Gold flowering 2	0.392
	CRR073317	Gold flowering 3	1.683
	CRR073318	Tawny withering 1	1.852
	CRR073319	Tawny withering 2	1.733
	CRR073320	Tawny withering 3	2.801