Detail information of GWHGAAZE014543


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKCW75884.12.73197E-41hypothetical protein EUGRSUZ_D00268 [Eucalyptus grandis]
Swissprottr|Q8L3W1|VRN1_ARATH2E-20B3 domain-containing transcription factor VRN1
trEMBLtr|A0A059CCB4|A0A059CCB4_EUCGR1E-41Uncharacterized protein {ECO:0000313|EMBL:KCW75884.1}
TAIR10AT3G18990.17E-19AP2/B3-like transcriptional factor family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene1366312913666357-
GWHAAZE00000004mRNA1366312913666357-
GWHAAZE00000004exon1366312913663368-
GWHAAZE00000004exon1366407313664257-
GWHAAZE00000004exon1366433513664415-
GWHAAZE00000004exon1366450413664750-
GWHAAZE00000004exon1366494613665130-
GWHAAZE00000004exon1366521613665537-
GWHAAZE00000004exon1366628613666357-
GWHAAZE00000004CDS1366628613666357-
GWHAAZE00000004CDS1366521613665537-
GWHAAZE00000004CDS1366494613665130-
GWHAAZE00000004CDS1366450413664750-
GWHAAZE00000004CDS1366433513664415-
GWHAAZE00000004CDS1366407313664257-
GWHAAZE00000004CDS1366312913663368-
Transcript Sequence

Network for GWHGAAZE014543

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02362.22B324991.80E-13
PF02362.22B31792676.90E-13
PF02362.22B33504411.20E-11
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyB3

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.070
SRR3591706second leaf0.778
SRR3591707mature leaf0.227
SRR3591708Shoot apex7.231
SRR3591709Stem1.766
SRR3591710White floral bud4.508
SRR3591711White flower2.935
SRR3591712Green floral bud2.556
SRR3591713Yellow flower0.068
SRP173429 SRR8316895Juvenile bud stage 3.395
SRR8316896Juvenile bud stage 4.182
SRR8316897Juvenile bud stage 1.568
SRR8316894Third green stage 1.890
SRR8316900Third green stage 1.296
SRR8316901Third green stage 0.744
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 2.924
SRR8316903Complete white stage 0.627
SRR8316902Silver flowering stage0.030
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.085
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.049
SRP132670SRR6706286Control0.553
SRR6706287Light intensity 50%0.997
SRR6706288Light intensity 20%0.942
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.414
CNS0095593Slightly white alabastrum(diploid) 24.485
CNS0095594Slightly white alabastrum(diploid) 34.991
CNS0095595Whole white alabastrum(diploid) 24.377
CNS0095596Whole white alabastrum(diploid) 31.809
CNS0095597Whole white alabastrum(diploid) 42.615
CNS0095598Silvery flower (diploied) 19.421
CNS0095599Silvery flower (diploied) 25.461
CNS0095600Silvery flower (diploied) 31.457
CNS0095601Golden flower (diploid) 19.165
CNS0095602Golden flower (diploid) 22.897
CNS0095603Golden flower (diploid) 33.051
CNS0095604Slightly white alabastrum(tetraploid) 16.451
CNS0095605Slightly white alabastrum(tetraploid) 24.601
CNS0095606Slightly white alabastrum(tetraploid) 38.880
CNS0095607Whole white alabastrum(tetraploid) 13.876
CNS0095608Whole white alabastrum(tetraploid) 20.731
CNS0095609Whole white alabastrum(tetraploid) 31.253
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 21.680
CNS0095612Silvery flower (tetraploid) 30.391
CNS0095613Golden flower (tetraploid) 10.079
CNS0095614Golden flower (tetraploid) 20.329
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 15.196
CRR073298Stem 24.120
CRR073299Stem 31.983
CRR073300Leaf 11.450
CRR073301Leaf 21.642
CRR073302Leaf 30.625
CRR073303Juvenile bud 10.651
CRR073304Juvenile bud 20.028
CRR073305Juvenile bud 30.832
CRR073306Third green 10.002
CRR073307Third green 20.000
CRR073308Third green 30.037
CRR073309Second white 10.029
CRR073310Second white 20.000
CRR073311Second white 30.002
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.303
CRR073317Gold flowering 30.093
CRR073318Tawny withering 10.217
CRR073319Tawny withering 20.346
CRR073320Tawny withering 30.928