Gene detail

Detail information of GWHGAAZE014555

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AGX93050.1	0	geraniol 10-hydroxylase-like protein [Lonicera japonica]
Swissprot	tr\|Q8VWZ7\|C76B6_CATRO	1E-168	Geraniol 8-hydroxylase
trEMBL	tr\|U5NH25\|U5NH25_LONJA	0	Geraniol 10-hydroxylase-like protein {ECO:0000313\|EMBL:AGX93050.1}
TAIR10	AT2G45580.1	5E-48	cytochrome P450, family 76, subfamily C, polypeptide 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	13807354	13808286	+
GWHAAZE00000004	mRNA	13807354	13808286	+
GWHAAZE00000004	exon	13807354	13808286	+
GWHAAZE00000004	CDS	13807354	13808286	+

Transcript Sequence
>GWHTAAZE014569 ATGGATTTCTTCACCATTGCTCTCTCTCTACTCTTTGCCTTCACTTTGTTTAAGGCCATTATTTCTCTAACAAAATCAGGCAAGAACAAAAACCTCCCACCTGGACCAGCACCACTCCCCATCATCGGCAGCCTTCACAAATTAGGTGACCAGCCCCACCAGTCCCTCGCCAAGCTAGCCAAAATCTATGGCCCAATCATGTCACTGAAACTCGGCCGAATCACCACTGTGGTCATATCCTCCTCGGACGCCGCAAAAGAGGTCCTACAAAAGAAGGACCTCGCCTTCTCGAGCCGCCATGTGCCTGACGCTCTCCATGCCCACAACCAATTCAAATTCTCGGTAGTGTGGTTGCCCGTGGCACCCCAGTGGCGGTCCCTACGCAAAATATTGAACTCCAATATTTTCTCCGGAAACCGCCTCGACGCTAACCAGCACCTGAGGTGTAGGAAAGTGGAAGAGCTTATTACTTATTGCCGCAAGAGTAGCCATTCGGGTGATGCGGTCGATATTGGCCGGGCTGCCTTTAGGACTTCACTTAACTTGCTATCCAATACCATTTTTTCCAAGGACTTGACCGATCCGTACCAGGATTCGGCCAAGGAATTCAAGGAATTGGTCGGGAATATAATGGTGGAGGCTGGGAAGCCCAATTTGGTCGACTTTTTCCCATCTCTAAAGAAGATTGATCCTCAGGGCATAAGGCATAGGATGACTATTCATTTCGGGAAGGTACTTGAACTCTTTGGCGGATTGATTAATGAGCGATTGGAGTTGAAGAGTTCACAAAAGAGTGATGAAAAGAATGATGTGTTGGATGTGTGTCTCAGTATCAGCAAAGAGAATCCTGATGAGATCGATCGCACTCACATCGAGCGCATGTGTCTGGTACGTACTTTTTTAAGTAAAATAATGTGTCACTTATTGAATTGA

Network for GWHGAAZE014555

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0264

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	33	295	1.00E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	53.638
	SRR3591706	second leaf	336.885
	SRR3591707	mature leaf	49.994
	SRR3591708	Shoot apex	176.812
	SRR3591709	Stem	0.676
	SRR3591710	White floral bud	1.838
	SRR3591711	White flower	0.344
	SRR3591712	Green floral bud	43.313
	SRR3591713	Yellow flower	0.245
SRP173429	SRR8316895	Juvenile bud stage	148.405
	SRR8316896	Juvenile bud stage	103.051
	SRR8316897	Juvenile bud stage	42.658
	SRR8316894	Third green stage	15.442
	SRR8316900	Third green stage	7.001
	SRR8316901	Third green stage	12.300
	SRR8316898	Complete white stage	0.998
	SRR8316899	Complete white stage	18.034
	SRR8316903	Complete white stage	1.925
	SRR8316902	Silver flowering stage	0.039
	SRR8316904	Silver flowering stage	0.099
	SRR8316905	Silver flowering stage	0.147
	SRR8316906	Gold flowering stage	0.674
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.452
SRP132670	SRR6706286	Control	29.935
	SRR6706287	Light intensity 50%	18.326
	SRR6706288	Light intensity 20%	19.202
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	117.863
	CNS0095593	Slightly white alabastrum(diploid) 2	122.466
	CNS0095594	Slightly white alabastrum(diploid) 3	155.081
	CNS0095595	Whole white alabastrum(diploid) 2	266.407
	CNS0095596	Whole white alabastrum(diploid) 3	8.474
	CNS0095597	Whole white alabastrum(diploid) 4	139.530
	CNS0095598	Silvery flower (diploied) 1	19.453
	CNS0095599	Silvery flower (diploied) 2	31.069
	CNS0095600	Silvery flower (diploied) 3	2.732
	CNS0095601	Golden flower (diploid) 1	0.525
	CNS0095602	Golden flower (diploid) 2	0.507
	CNS0095603	Golden flower (diploid) 3	0.630
	CNS0095604	Slightly white alabastrum(tetraploid) 1	77.005
	CNS0095605	Slightly white alabastrum(tetraploid) 2	119.714
	CNS0095606	Slightly white alabastrum(tetraploid) 3	477.630
	CNS0095607	Whole white alabastrum(tetraploid) 1	52.864
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.615
	CNS0095609	Whole white alabastrum(tetraploid) 3	32.661
	CNS0095610	Silvery flower (tetraploid) 1	0.589
	CNS0095611	Silvery flower (tetraploid) 2	0.776
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.120
	CNS0095614	Golden flower (tetraploid) 2	0.176
	CNS0095615	Golden flower (tetraploid) 3	0.070
CRA001975	CRR073297	Stem 1	95.086
	CRR073298	Stem 2	130.080
	CRR073299	Stem 3	177.406
	CRR073300	Leaf 1	10.057
	CRR073301	Leaf 2	8.598
	CRR073302	Leaf 3	10.568
	CRR073303	Juvenile bud 1	26.422
	CRR073304	Juvenile bud 2	19.204
	CRR073305	Juvenile bud 3	23.900
	CRR073306	Third green 1	0.213
	CRR073307	Third green 2	1.919
	CRR073308	Third green 3	0.084
	CRR073309	Second white 1	0.103
	CRR073310	Second white 2	0.129
	CRR073311	Second white 3	0.183
	CRR073312	Silver flowering 1	0.196
	CRR073313	Silver flowering 2	0.262
	CRR073314	Silver flowering 3	0.035
	CRR073315	Gold flowering 1	46.202
	CRR073316	Gold flowering 2	55.323
	CRR073317	Gold flowering 3	155.791
	CRR073318	Tawny withering 1	303.915
	CRR073319	Tawny withering 2	88.691
	CRR073320	Tawny withering 3	535.125