Gene detail

Detail information of GWHGAAZE014564

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010268554.1	0	PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 [Nelumbo nucifera]
Swissprot	tr\|Q9C566\|CYP40_ARATH	0	Peptidyl-prolyl cis-trans isomerase CYP40
trEMBL	tr\|B9H6E0\|B9H6E0_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:EEE93456.1}
TAIR10	AT2G15790.1	2E-160	peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	13937793	13944454	+
GWHAAZE00000004	mRNA	13937793	13944454	+
GWHAAZE00000004	exon	13937793	13937963	+
GWHAAZE00000004	exon	13939976	13940476	+
GWHAAZE00000004	exon	13940800	13940887	+
GWHAAZE00000004	exon	13941001	13941053	+
GWHAAZE00000004	exon	13942987	13943091	+
GWHAAZE00000004	exon	13943593	13943668	+
GWHAAZE00000004	exon	13943763	13943800	+
GWHAAZE00000004	exon	13943920	13943989	+
GWHAAZE00000004	exon	13944118	13944164	+
GWHAAZE00000004	exon	13944383	13944454	+
GWHAAZE00000004	CDS	13937793	13937963	+
GWHAAZE00000004	CDS	13939976	13940476	+
GWHAAZE00000004	CDS	13940800	13940887	+
GWHAAZE00000004	CDS	13941001	13941053	+
GWHAAZE00000004	CDS	13942987	13943091	+
GWHAAZE00000004	CDS	13943593	13943668	+
GWHAAZE00000004	CDS	13943763	13943800	+
GWHAAZE00000004	CDS	13943920	13943973	+
GWHAAZE00000004	three_prime_UTR	13943974	13943989	+
GWHAAZE00000004	three_prime_UTR	13944118	13944164	+
GWHAAZE00000004	three_prime_UTR	13944383	13944454	+

Transcript Sequence
>GWHTAAZE014578 ATGGTAAATCCAAGGTGCTATTTGGATATAAGCATTGGAGGAGAGCTGGAAGGGAGAATAGTGATTGAGCTATACAAAGATGTTGTCCCCAAAACCGCCGAAAACTTTAGGGCTCTTTGTACCGGCGAGAAGGGCATTGGCCCTAATACTGGGGTTCCACTACATTTCAAGGGATCCTGTTTTCATCGCGTAATCAAAGGATTTATGATACAAGGTGGTGATATATCTGCTCGGGATGGCACTGGTGGAGAATCCATCTACGGCTTGAAATTCGAAGACGAAAATTTTGAGTTGAAGCATGAAAGAAAAGGGATGTTAGCTATGGCTAATAGTGGCCCTAACACCAATGGCTCTCAATTCTTTATCACTACAACTCGGACATCTCATCTAGATGGAAAGCATGTTGTATTTGGCAAGGTAATCAAAGGGATGGGTGTTGTTCGTTCAGTTGAGCATGTTACTACCGGAGAAAACGATCTCCCCACTCTTGATGTTATAGTGGAGGATTGTGGAGAAATTCCTGAGGGATCCGATGATGGGGTATCCAACTTTTTTAAAGATGGTGACACTTATCCTGATTGCCCAGCCGACCTTGATGTTAAACCCGATGAAGTTTCTTGGTGGATGAGCGCTGTAGACTCTGTTAAAGTTTTTGGAAATGAACAGTTCAAGAAACAGGACTATAAAATGGCTCTTAGAAAGTATAGCAAGGCACTCCGATACTTGGATGTTTGCTGGGAAAAGGATGACATTGATGAAGAGAAAAGCCAATCTTTACGAAAGATGAAATCGCAAATTTTTACAAATAGTTCTGCTTGCAAATTGAAATTGGGAGATACAAAAGGAGCATTGTTGGATGCAGACTTTGCAATTCGTGATGGTGAAGATAATGTGAAAGCTTATTTCCGCCAAGGCCAGGCATACATGGCACTGCTCGACATTGATTCTGCAGTCGAGAGTTTCAAGAAGGCCCTAGTGTTGGAACCAAATGACGGTGGTATAAAGAAGGAGCTTGCTGCTGCAAAGAAGAAAATTGCTGATAGACGCGATCAGGAGAAAAAGGCTTACTCAAGAATGTTCAAGTAGAGCTCAGGCAGTCAAGGTGATATAGACTTAAGTTCAGGCTTTTCTTTGCGGAGGAAGCATCAGGCTTTGTTGCGGAGCAAAAGAAAACTTGCAGATCCTTTGGATACAACTAGAAGAGAGATTTAAACTTGGAAA

Network for GWHGAAZE014564

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00160.22	Pro_isomerase	8	171	1.10E-47
PF00515.29	TPR_1	298	331	5.00E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05864	PPID, CYPD	Necroptosis	map04217
K05864	PPID, CYPD	Cellular senescence	map04218

Gene Ontology

GO term	Ontology	Name
GO:0000413	biological_process	protein peptidyl-prolyl isomerization
GO:0006457	biological_process	protein folding
GO:0005515	molecular_function	protein binding
GO:0003755	molecular_function	peptidyl-prolyl cis-trans isomerase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.207
	SRR3591706	second leaf	4.968
	SRR3591707	mature leaf	6.822
	SRR3591708	Shoot apex	30.271
	SRR3591709	Stem	11.977
	SRR3591710	White floral bud	4.969
	SRR3591711	White flower	9.071
	SRR3591712	Green floral bud	13.877
	SRR3591713	Yellow flower	5.706
SRP173429	SRR8316895	Juvenile bud stage	16.774
	SRR8316896	Juvenile bud stage	26.916
	SRR8316897	Juvenile bud stage	9.936
	SRR8316894	Third green stage	6.841
	SRR8316900	Third green stage	17.271
	SRR8316901	Third green stage	14.866
	SRR8316898	Complete white stage	2.387
	SRR8316899	Complete white stage	13.160
	SRR8316903	Complete white stage	3.459
	SRR8316902	Silver flowering stage	2.540
	SRR8316904	Silver flowering stage	3.199
	SRR8316905	Silver flowering stage	1.451
	SRR8316906	Gold flowering stage	5.595
	SRR8316907	Gold flowering stage	4.552
	SRR8316908	Gold flowering stage	4.320
SRP132670	SRR6706286	Control	6.916
	SRR6706287	Light intensity 50%	8.434
	SRR6706288	Light intensity 20%	9.383
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.730
	CNS0095593	Slightly white alabastrum(diploid) 2	22.131
	CNS0095594	Slightly white alabastrum(diploid) 3	19.510
	CNS0095595	Whole white alabastrum(diploid) 2	13.455
	CNS0095596	Whole white alabastrum(diploid) 3	13.983
	CNS0095597	Whole white alabastrum(diploid) 4	8.240
	CNS0095598	Silvery flower (diploied) 1	14.399
	CNS0095599	Silvery flower (diploied) 2	9.163
	CNS0095600	Silvery flower (diploied) 3	6.771
	CNS0095601	Golden flower (diploid) 1	11.239
	CNS0095602	Golden flower (diploid) 2	6.594
	CNS0095603	Golden flower (diploid) 3	5.968
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.002
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.078
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.281
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.064
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.315
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.335
	CNS0095610	Silvery flower (tetraploid) 1	9.142
	CNS0095611	Silvery flower (tetraploid) 2	8.272
	CNS0095612	Silvery flower (tetraploid) 3	6.261
	CNS0095613	Golden flower (tetraploid) 1	3.625
	CNS0095614	Golden flower (tetraploid) 2	9.347
	CNS0095615	Golden flower (tetraploid) 3	3.507
CRA001975	CRR073297	Stem 1	14.860
	CRR073298	Stem 2	12.775
	CRR073299	Stem 3	10.949
	CRR073300	Leaf 1	9.288
	CRR073301	Leaf 2	9.456
	CRR073302	Leaf 3	6.700
	CRR073303	Juvenile bud 1	7.781
	CRR073304	Juvenile bud 2	2.751
	CRR073305	Juvenile bud 3	5.217
	CRR073306	Third green 1	0.475
	CRR073307	Third green 2	0.435
	CRR073308	Third green 3	0.974
	CRR073309	Second white 1	0.709
	CRR073310	Second white 2	2.477
	CRR073311	Second white 3	1.164
	CRR073312	Silver flowering 1	1.056
	CRR073313	Silver flowering 2	0.722
	CRR073314	Silver flowering 3	0.427
	CRR073315	Gold flowering 1	10.481
	CRR073316	Gold flowering 2	13.025
	CRR073317	Gold flowering 3	3.921
	CRR073318	Tawny withering 1	10.685
	CRR073319	Tawny withering 2	12.524
	CRR073320	Tawny withering 3	12.511