Gene detail

Detail information of GWHGAAZE014581

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP02488.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q0JP99\|Y1341_ORYSJ	4E-83	B3 domain-containing protein Os01g0234100
trEMBL	tr\|A0A068U4F2\|A0A068U4F2_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02488.1}
TAIR10	AT3G19184.1	6E-33	AP2/B3-like transcriptional factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	14443921	14448265	+
GWHAAZE00000004	mRNA	14443921	14448265	+
GWHAAZE00000004	exon	14443921	14444130	+
GWHAAZE00000004	exon	14444217	14444318	+
GWHAAZE00000004	exon	14445729	14445760	+
GWHAAZE00000004	exon	14445845	14446007	+
GWHAAZE00000004	exon	14446301	14446507	+
GWHAAZE00000004	exon	14447119	14447212	+
GWHAAZE00000004	exon	14447312	14448059	+
GWHAAZE00000004	exon	14448241	14448265	+
GWHAAZE00000004	CDS	14443921	14444130	+
GWHAAZE00000004	CDS	14444217	14444318	+
GWHAAZE00000004	CDS	14445729	14445760	+
GWHAAZE00000004	CDS	14445845	14446007	+
GWHAAZE00000004	CDS	14446301	14446507	+
GWHAAZE00000004	CDS	14447119	14447212	+
GWHAAZE00000004	CDS	14447312	14448059	+
GWHAAZE00000004	CDS	14448241	14448265	+

Transcript Sequence
>GWHTAAZE014595 ATGACAACCCAAGGTCTGGATAATCCTGATGTTCAAGATGATCGAGAGGTGATTAAGAAGGAAATTGTTGAAGAAGAGGAGTTGGATCATCAAGACTATGAATGGGCTACACCGGATCAAACTCCCAAATCTAAGCAACTAAATTCTATTTTGCCCCAATTGTCCGACACTAACACTGATACTACCTCCACTCCCTTGCCTTTTTCCCAGCACCAGCTGGGTAAGAGAAAGAGGTCCAGTAAGATAAAGGAAATTCTCTCTGAGATCAAGAATAATAAGAAGAAGAATCCCCTTGCTTCCAATTCAAAGCCTGTGATACCTAATTTATCAGGAAAGCGTGTGAGGTGCAAGCAAGAAAAGAATCCAATTATTGGATTAAATAGTCCTGGTCAAGTTAAGTCGCCTGCAATGGTTCGAGCAGAGGAGGTTAGATTGAATCTAGGACCTGAATCTCCTAGCTTTCTAAAGTTGTTGGTTAGATCTCATGTTGTAACCGGCTTTTGGATGAGCCTTCCGGTGCCATTCTGCAAGTTACACCTGCCAAAGAAGGATGCTATGGTCATTCTGGAGGATGAGAGTGGGGAACAATTTGAGCTCAAATACATTGTAGAAAAGACAGGGCTTAGCGCAGGGTGGAAAAAGTTCGCTGTTGGACACCAGTTGCTTGAAGGAGATGTTTTGGTCTTCCATTTAGTTGGACAAGACAAATTTAAGGTGTATATAATACGAGCAAATGATCTGACAGATGTGGATGGTGCTCTTAGCCTTTTGAATTTGGATGCTATCTCAAAACAAATTAATGCAACAGACAAAGAGGACAGGCCAGCTCCTAAACCCAAGAGACGAAAGCGACCAAACTCTAATCCATCAACTTTGGTCGGAAAGAAGAACAAGAAAACAGGACTAACAAGCTCAGTACTTCAAGTTGGGCAACCAGTGGAACAATCCGGAAATGATAGCGAGGTTGGTTCGGAAATTTTGGAAGGTTCGAAATTTTCAGAGTCCACCGGATCTTTTAAGGACATAAAATGCTTTGAAGATTTCCACATTACGGTAAATGGCTTGTGCATAGACGCTGAGCTCCCTAAACATATGCGTCTTAAATATTATGAGCTCTGCAAGAGTAGAAGTGCGTATCTGCACGACCGCATTCTTTCGGGCCTCTATTCTAAGCTCGTGGCTGGTATAATTGGTGAAACGGTAAATATTGCGGACGCCATAAGAGAGTGCAATTTCACTACCTCTCGAGATGAAATTGCACTTTGGGAGAAATCATTGAAATCCTTTGCGCTTTTGGGGATGAACGTTGGGTTTATGCGTAATCGGATACGCCGGCTTTTAAGCCTTGCCTTTGAGTCCGAAGGTGCCTCAGAGACCAGGAGGTATATAGAGGCTAAAACTGAGCGAATTCGAGTCGAAGATGAAATAATGAATCTTGAAGCAAAGCTTGTAGAACTTAAGGAAGCCACTGAGAGGTGTGGTGCTGATATCGAGAGTCTAAAACCCGAGGCTGAGAGGTATGAACTCAAGTTTCGGGAGGAGATTAACGCTCCATGGGTCATTGCTGAGATCAGTTCTTGA

Network for GWHGAAZE014581

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.22	B3	154	244	1.30E-17

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.851
	SRR3591706	second leaf	11.114
	SRR3591707	mature leaf	15.892
	SRR3591708	Shoot apex	17.873
	SRR3591709	Stem	25.998
	SRR3591710	White floral bud	19.393
	SRR3591711	White flower	18.175
	SRR3591712	Green floral bud	16.451
	SRR3591713	Yellow flower	10.129
SRP173429	SRR8316895	Juvenile bud stage	15.113
	SRR8316896	Juvenile bud stage	17.501
	SRR8316897	Juvenile bud stage	6.451
	SRR8316894	Third green stage	6.963
	SRR8316900	Third green stage	18.824
	SRR8316901	Third green stage	18.147
	SRR8316898	Complete white stage	9.596
	SRR8316899	Complete white stage	34.171
	SRR8316903	Complete white stage	18.091
	SRR8316902	Silver flowering stage	10.433
	SRR8316904	Silver flowering stage	12.364
	SRR8316905	Silver flowering stage	6.505
	SRR8316906	Gold flowering stage	20.653
	SRR8316907	Gold flowering stage	19.190
	SRR8316908	Gold flowering stage	23.202
SRP132670	SRR6706286	Control	12.428
	SRR6706287	Light intensity 50%	13.107
	SRR6706288	Light intensity 20%	13.535
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.747
	CNS0095593	Slightly white alabastrum(diploid) 2	12.316
	CNS0095594	Slightly white alabastrum(diploid) 3	14.015
	CNS0095595	Whole white alabastrum(diploid) 2	12.260
	CNS0095596	Whole white alabastrum(diploid) 3	7.903
	CNS0095597	Whole white alabastrum(diploid) 4	11.766
	CNS0095598	Silvery flower (diploied) 1	22.021
	CNS0095599	Silvery flower (diploied) 2	14.270
	CNS0095600	Silvery flower (diploied) 3	18.210
	CNS0095601	Golden flower (diploid) 1	15.763
	CNS0095602	Golden flower (diploid) 2	17.832
	CNS0095603	Golden flower (diploid) 3	17.583
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.420
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.915
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.770
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.576
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.799
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.653
	CNS0095610	Silvery flower (tetraploid) 1	20.718
	CNS0095611	Silvery flower (tetraploid) 2	17.824
	CNS0095612	Silvery flower (tetraploid) 3	16.838
	CNS0095613	Golden flower (tetraploid) 1	10.237
	CNS0095614	Golden flower (tetraploid) 2	14.510
	CNS0095615	Golden flower (tetraploid) 3	8.177
CRA001975	CRR073297	Stem 1	16.871
	CRR073298	Stem 2	16.346
	CRR073299	Stem 3	13.219
	CRR073300	Leaf 1	15.053
	CRR073301	Leaf 2	15.192
	CRR073302	Leaf 3	11.300
	CRR073303	Juvenile bud 1	13.599
	CRR073304	Juvenile bud 2	10.238
	CRR073305	Juvenile bud 3	14.675
	CRR073306	Third green 1	6.431
	CRR073307	Third green 2	5.908
	CRR073308	Third green 3	6.549
	CRR073309	Second white 1	10.360
	CRR073310	Second white 2	10.666
	CRR073311	Second white 3	10.819
	CRR073312	Silver flowering 1	5.201
	CRR073313	Silver flowering 2	5.023
	CRR073314	Silver flowering 3	5.782
	CRR073315	Gold flowering 1	11.918
	CRR073316	Gold flowering 2	18.077
	CRR073317	Gold flowering 3	11.375
	CRR073318	Tawny withering 1	13.602
	CRR073319	Tawny withering 2	18.668
	CRR073320	Tawny withering 3	14.130