Detail information of GWHGAAZE014601


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP02498.10unnamed protein product [Coffea canephora]
Swissprottr|Q8W034|RNP1_ARATH6E-29Heterogeneous nuclear ribonucleoprotein 1
trEMBLtr|A0A068U4G0|A0A068U4G0_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313|EMBL:CDP02498.1}
TAIR10AT4G36960.23E-128RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene1499248115000034-
GWHAAZE00000004mRNA1499248115000034-
GWHAAZE00000004exon1500001415000034-
GWHAAZE00000004exon1499982414999913-
GWHAAZE00000004exon1499907114999136-
GWHAAZE00000004exon1499881514998880-
GWHAAZE00000004exon1499805014998135-
GWHAAZE00000004exon1499784914997894-
GWHAAZE00000004exon1499765414997708-
GWHAAZE00000004exon1499643914996491-
GWHAAZE00000004exon1499611014996257-
GWHAAZE00000004exon1499588814996021-
GWHAAZE00000004exon1499568014995784-
GWHAAZE00000004exon1499518314995323-
GWHAAZE00000004exon1499439614994632-
GWHAAZE00000004exon1499248114992995-
GWHAAZE00000004CDS1500001415000034-
GWHAAZE00000004CDS1499982414999913-
GWHAAZE00000004CDS1499907114999136-
GWHAAZE00000004CDS1499881514998880-
GWHAAZE00000004CDS1499805014998135-
GWHAAZE00000004CDS1499784914997894-
GWHAAZE00000004CDS1499765414997708-
GWHAAZE00000004CDS1499643914996491-
GWHAAZE00000004CDS1499611014996257-
GWHAAZE00000004CDS1499588814996021-
GWHAAZE00000004CDS1499568014995784-
GWHAAZE00000004CDS1499518314995323-
GWHAAZE00000004CDS1499439614994632-
GWHAAZE00000004three_prime_UTR1499248114992995-
Transcript Sequence

Network for GWHGAAZE014601

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.23RRM_16737.60E-14
PF00076.23RRM_1941503.30E-10
PF00076.23RRM_12242786.70E-12
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14411MSI mRNA surveillance pathway map03015

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.553
SRR3591706second leaf4.450
SRR3591707mature leaf8.132
SRR3591708Shoot apex6.293
SRR3591709Stem8.000
SRR3591710White floral bud8.697
SRR3591711White flower8.109
SRR3591712Green floral bud6.274
SRR3591713Yellow flower7.194
SRP173429 SRR8316895Juvenile bud stage 2.824
SRR8316896Juvenile bud stage 4.118
SRR8316897Juvenile bud stage 2.458
SRR8316894Third green stage 2.421
SRR8316900Third green stage 5.104
SRR8316901Third green stage 4.912
SRR8316898Complete white stage 2.039
SRR8316899Complete white stage 7.305
SRR8316903Complete white stage 3.847
SRR8316902Silver flowering stage2.576
SRR8316904Silver flowering stage4.005
SRR8316905Silver flowering stage1.746
SRR8316906Gold flowering stage 6.463
SRR8316907Gold flowering stage 6.722
SRR8316908Gold flowering stage 6.886
SRP132670SRR6706286Control5.638
SRR6706287Light intensity 50%5.469
SRR6706288Light intensity 20%5.475
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.768
CNS0095593Slightly white alabastrum(diploid) 21.924
CNS0095594Slightly white alabastrum(diploid) 32.316
CNS0095595Whole white alabastrum(diploid) 22.374
CNS0095596Whole white alabastrum(diploid) 31.829
CNS0095597Whole white alabastrum(diploid) 41.529
CNS0095598Silvery flower (diploied) 13.070
CNS0095599Silvery flower (diploied) 22.417
CNS0095600Silvery flower (diploied) 33.883
CNS0095601Golden flower (diploid) 12.541
CNS0095602Golden flower (diploid) 22.683
CNS0095603Golden flower (diploid) 32.599
CNS0095604Slightly white alabastrum(tetraploid) 14.326
CNS0095605Slightly white alabastrum(tetraploid) 23.931
CNS0095606Slightly white alabastrum(tetraploid) 36.279
CNS0095607Whole white alabastrum(tetraploid) 14.375
CNS0095608Whole white alabastrum(tetraploid) 22.048
CNS0095609Whole white alabastrum(tetraploid) 34.421
CNS0095610Silvery flower (tetraploid) 15.262
CNS0095611Silvery flower (tetraploid) 23.877
CNS0095612Silvery flower (tetraploid) 34.003
CNS0095613Golden flower (tetraploid) 11.594
CNS0095614Golden flower (tetraploid) 23.959
CNS0095615Golden flower (tetraploid) 34.003
CRA001975CRR073297Stem 14.688
CRR073298Stem 23.826
CRR073299Stem 32.494
CRR073300Leaf 15.488
CRR073301Leaf 25.822
CRR073302Leaf 33.185
CRR073303Juvenile bud 13.028
CRR073304Juvenile bud 22.548
CRR073305Juvenile bud 33.230
CRR073306Third green 12.186
CRR073307Third green 21.848
CRR073308Third green 32.398
CRR073309Second white 10.874
CRR073310Second white 22.739
CRR073311Second white 31.298
CRR073312Silver flowering 11.215
CRR073313Silver flowering 21.196
CRR073314Silver flowering 30.721
CRR073315Gold flowering 10.995
CRR073316Gold flowering 23.014
CRR073317Gold flowering 30.964
CRR073318Tawny withering 12.511
CRR073319Tawny withering 22.872
CRR073320Tawny withering 32.800