Gene detail

Detail information of GWHGAAZE014608

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010652804.1	3.91386E-74	PREDICTED: transcription factor SPATULA [Vitis vinifera]
Swissprot	tr\|Q9FUA4\|SPT_ARATH	6E-44	Transcription factor SPATULA
trEMBL	tr\|D7SVW1\|D7SVW1_VITVI	2E-74	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI21410.3}
TAIR10	AT4G36930.1	1E-26	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	15130811	15134282	-
GWHAAZE00000004	mRNA	15130811	15134282	-
GWHAAZE00000004	exon	15134172	15134282	-
GWHAAZE00000004	exon	15133988	15134068	-
GWHAAZE00000004	exon	15132363	15132428	-
GWHAAZE00000004	exon	15132194	15132253	-
GWHAAZE00000004	exon	15130811	15131080	-
GWHAAZE00000004	CDS	15134172	15134282	-
GWHAAZE00000004	CDS	15133988	15134068	-
GWHAAZE00000004	CDS	15132363	15132428	-
GWHAAZE00000004	CDS	15132194	15132253	-
GWHAAZE00000004	CDS	15130811	15131080	-

Transcript Sequence
>GWHTAAZE014622 ATGGTGTTCTCCTCCGCCGCCGATTATTTCCCGGTGAATGCTGCGAATTTGTCGTCGTCGTCAGTTGGAACAATTGACAATGATCCTGATGAGTACGATTGCGAAAGCGAGGAGGGACTTGAGGCGCTGGTGGAAGAGGCATCTGAAAAACGAACTCGTCGCAGCTCTTCAAAGAGAAGCAGAGCCGCTGAAAGGAGGAGGAGTAGGATCAATGAGAAAATGAAAGCATTGCAGAATTTAATACCGAATTCAAATAAGACGGATAAGGCTTCAATGCTGGACGAAGCCATTGAGTACCTGAAGCAGTTACAGCTCCAAATGTTAACGATGAGAAATGGATTAAGTTTGTATCCAATGTGCCTGCCTGGATTGCAGCCAACCCAATTCTCTCATGCGAGAATGGGATTTTCTGAGGGAAATGGATCCTTAAACATTAACGTGACAGGCTCAATTCCGGTGAACCAAGAACAGCTTGGAACCAATGTGTCAAATATTTTAAACTCTGAAACATCGTTCGGACTGGAAATGGAACCGTCAATTAGGGCTCAACGTGGCCCCTTTGGCCACCCTGAGGCAAGTTTAGTATGA

Network for GWHGAAZE014608

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0098

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.27	HLH	65	104	1.60E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.906
	SRR3591706	second leaf	5.139
	SRR3591707	mature leaf	0.136
	SRR3591708	Shoot apex	13.957
	SRR3591709	Stem	2.132
	SRR3591710	White floral bud	12.003
	SRR3591711	White flower	7.583
	SRR3591712	Green floral bud	29.831
	SRR3591713	Yellow flower	4.453
SRP173429	SRR8316895	Juvenile bud stage	17.930
	SRR8316896	Juvenile bud stage	23.381
	SRR8316897	Juvenile bud stage	11.930
	SRR8316894	Third green stage	8.677
	SRR8316900	Third green stage	20.846
	SRR8316901	Third green stage	19.585
	SRR8316898	Complete white stage	0.487
	SRR8316899	Complete white stage	14.116
	SRR8316903	Complete white stage	1.654
	SRR8316902	Silver flowering stage	0.986
	SRR8316904	Silver flowering stage	1.023
	SRR8316905	Silver flowering stage	0.487
	SRR8316906	Gold flowering stage	1.465
	SRR8316907	Gold flowering stage	1.129
	SRR8316908	Gold flowering stage	0.922
SRP132670	SRR6706286	Control	9.622
	SRR6706287	Light intensity 50%	9.361
	SRR6706288	Light intensity 20%	10.235
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.090
	CNS0095593	Slightly white alabastrum(diploid) 2	20.696
	CNS0095594	Slightly white alabastrum(diploid) 3	28.779
	CNS0095595	Whole white alabastrum(diploid) 2	36.668
	CNS0095596	Whole white alabastrum(diploid) 3	38.224
	CNS0095597	Whole white alabastrum(diploid) 4	36.951
	CNS0095598	Silvery flower (diploied) 1	5.409
	CNS0095599	Silvery flower (diploied) 2	4.401
	CNS0095600	Silvery flower (diploied) 3	2.870
	CNS0095601	Golden flower (diploid) 1	3.130
	CNS0095602	Golden flower (diploid) 2	3.578
	CNS0095603	Golden flower (diploid) 3	2.287
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.747
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.585
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.821
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.151
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.300
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.571
	CNS0095610	Silvery flower (tetraploid) 1	0.415
	CNS0095611	Silvery flower (tetraploid) 2	1.897
	CNS0095612	Silvery flower (tetraploid) 3	4.860
	CNS0095613	Golden flower (tetraploid) 1	1.155
	CNS0095614	Golden flower (tetraploid) 2	0.027
	CNS0095615	Golden flower (tetraploid) 3	2.134
CRA001975	CRR073297	Stem 1	82.894
	CRR073298	Stem 2	64.388
	CRR073299	Stem 3	61.155
	CRR073300	Leaf 1	36.737
	CRR073301	Leaf 2	31.615
	CRR073302	Leaf 3	30.847
	CRR073303	Juvenile bud 1	25.356
	CRR073304	Juvenile bud 2	8.279
	CRR073305	Juvenile bud 3	10.918
	CRR073306	Third green 1	2.410
	CRR073307	Third green 2	3.117
	CRR073308	Third green 3	2.979
	CRR073309	Second white 1	1.625
	CRR073310	Second white 2	2.242
	CRR073311	Second white 3	1.376
	CRR073312	Silver flowering 1	2.829
	CRR073313	Silver flowering 2	4.948
	CRR073314	Silver flowering 3	1.320
	CRR073315	Gold flowering 1	1.444
	CRR073316	Gold flowering 2	0.251
	CRR073317	Gold flowering 3	1.673
	CRR073318	Tawny withering 1	12.262
	CRR073319	Tawny withering 2	14.069
	CRR073320	Tawny withering 3	12.428