Gene detail

Detail information of GWHGAAZE014612

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004288020.1	0	PREDICTED: LOW QUALITY PROTEIN: histone-lysine N-methyltransferase CLF-like [Fragaria vesca subsp. vesca]
Swissprot	tr\|P93831\|CLF_ARATH	1E-141	Histone-lysine N-methyltransferase CLF
trEMBL	tr\|M0ZXQ3\|M0ZXQ3_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400010235}
TAIR10	AT2G23380.1	7E-117	SET domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	15191909	15208410	-
GWHAAZE00000004	mRNA	15191909	15208410	-
GWHAAZE00000004	exon	15208348	15208410	-
GWHAAZE00000004	exon	15205128	15205229	-
GWHAAZE00000004	exon	15204710	15205035	-
GWHAAZE00000004	exon	15204340	15204501	-
GWHAAZE00000004	exon	15203289	15203373	-
GWHAAZE00000004	exon	15202689	15202835	-
GWHAAZE00000004	exon	15202534	15202581	-
GWHAAZE00000004	exon	15202377	15202448	-
GWHAAZE00000004	exon	15196015	15196622	-
GWHAAZE00000004	exon	15195509	15195651	-
GWHAAZE00000004	exon	15195155	15195280	-
GWHAAZE00000004	exon	15194825	15194947	-
GWHAAZE00000004	exon	15194101	15194258	-
GWHAAZE00000004	exon	15193598	15193645	-
GWHAAZE00000004	exon	15193016	15193093	-
GWHAAZE00000004	exon	15191909	15192100	-
GWHAAZE00000004	CDS	15208348	15208410	-
GWHAAZE00000004	CDS	15205128	15205229	-
GWHAAZE00000004	CDS	15204710	15205035	-
GWHAAZE00000004	CDS	15204340	15204501	-
GWHAAZE00000004	CDS	15203289	15203373	-
GWHAAZE00000004	CDS	15202689	15202835	-
GWHAAZE00000004	CDS	15202534	15202581	-
GWHAAZE00000004	CDS	15202377	15202448	-
GWHAAZE00000004	CDS	15196015	15196622	-
GWHAAZE00000004	CDS	15195509	15195651	-
GWHAAZE00000004	CDS	15195155	15195280	-
GWHAAZE00000004	CDS	15194825	15194947	-
GWHAAZE00000004	CDS	15194101	15194258	-
GWHAAZE00000004	CDS	15193598	15193645	-
GWHAAZE00000004	CDS	15193016	15193093	-
GWHAAZE00000004	CDS	15191909	15192100	-

Transcript Sequence
>GWHTAAZE014626 ATGTCTTCGTCAAAGGCATCCCTCTCCACTTCCAAATCTCTTCGTAGATCCGATGGACGAAAGGTCCCGGTACCCGAAGAAACAAGTCCAGCGCCTTATGAAATTTTGTCAGTCATAGATTCATTGAAGAAACAAGTTGCTGTTGACCGCTGTGCTCATATAAAGAAGAGAATGGAGGAAAATCAACGCAAATTGTCCGAGGTCACCAACAACCACTTTAAATTGTCAGTAGAAAGAAGAAATCTTCAGTCTATTGACACTGGTAGAAGTGTTGATCTACTGACAAAGAGGCAGAAAGATGCAGTGGATATGCAAAATGGTGTTGATATAAGGAGTGGAGATAACGACGGTAATGATTCCCAAGAAGATGGAAATGCCTCAACAGCAATTCTTCTGGGATCTAGTATTGCAACGAAGAATGCTGTTCGCCCCATCAAGCTTAAAGAAGTGAAAAGAATACCTCCCTATACCACATGGATTTTCCTGGATAGAAATCAAAGAATGTCAGAGGATCAATCTGTAGTAGGTCGAAGGAGAATTTATTATGATCAAAATGGAGGCGAAGCACTACTAGCCAGTGACAGTGATGAAGAAGCGATTGAAGATGATGAAGAAAAGAAAGAATTTTTGGACTCAGAAGATTACATTCTTCGAATGACCATTAAAGAAGTTGGCTTATCTGATGTTGTGTTGGATTTACTGGCGCAGTACCTATCTAGACAGCCATGTGAAGTCAAGGCAAGATATGAAGTTCTTATGAAGAGGGAGAATGCTGTGGGGGACTCTAAGTGTGAGCATATTGAAGGCACAACAAATTCGTTCCTCGATAAAGATCTTGATGCAGCCCTTGATTCATTTGACAATCTATTCTGCCGTAGATGTCTTGTATTTGATTGTAGATTACATGGATGTTCACAGGACCTCATATTTCCTGCTGAGAAACAGCTTCCTTGGAGCTCCCCGGATGAGGAAAATGTACCATGCAGCCCACACTGTTATCGCCTGGTCCTAAGTTCTCATGGTAATGATACACAGAGCTCTCCTTTGTGGATTCATTCGAAAGAAATAGTTATACATTCATCAGATGGTTCTGGTGCTCACATATCGAGGAGGCAATCTGATGGTCCATGTTTAAGGGGGTCAAAGTCTTGTCAAAGTGAAAGTTCCTCATCAAATGCTGGAAATGCGTCAGACAGCAGTGATTCAGAGGTTAGACCCGTACATGATGTCACTTCTACTCAACGCTCTTTATCACCACCTAAGACCAAGCTTGTTGGAAAACGTGGGATTTATAGAAGGAACAGTAAGCGAATTGCCGAGAATGTTCTTGTTGCTGTGAGGAAAAGGCAGAAGAAAACGGGTAACGATTTCGATCCTCTTGCTTGTAGAAGTGTTGTTTCAAAAGAAAATGAAGATGCTAGTTCCGGTTCACAAAAAGGTCCATTCAAGGAGATTATTTGCCATCAGCCTGGGACTAGTTGTGATGACACCTTAAAACATAACGAGTTTGTGGATGTGAAAATCTGTAAACAAGATTTGACCAATATCAAAGCCTGGAAAGGTATTGAAAAAGCTCTTTTTGAAAAAGGTTTGGAGATCTTTGGGAGGAACAGCTGTTTAATAGCTAGGAATCTTATGAAAGGTATGAAGACATGTTCAGAGGTATTCCAACTCATGAATTGGTCTGAAAATAAGCTTTCTTCTCAATCAGGCGATGGCAAAAACTCTCTGGTTGAAGGCTGTCCCAAGGTTGATGGAAACGGATTTCTGAGAGGAGGAAAGATGAGCCTTGTCGACAGTACAACCCATGTGGGTGCCAATCTGCATGTGGAAAGGAGTGTCCTTGCCTCGTCAATGAGACCTGCTGCGAGAAGTACTGTGGGACTTGCAAAAACCGATTTAGAGGTTGTCATTGCGCTAAAAGTCAGTGTAGAAGTCGTCAATGCCCATGCTTTGCTGCAGGCAGGGAATGTGATCCGGATGTTTGCCGTAATTGCTGGATCAGGCATGTACTCTTTCTTCCTCATTGTACACGTTCATTCTGTTTTAGCCTTTTCGAATTGGCTTTGTAGTTGCGGTGATGGCACTCTTGGGATTCCTTGGCAAAGAGGTGATAATTATGAATGTAGGAATATGAAGCTTCTCCTTAAACAGCAACAAAGGGTTTTGCTCGGAAGATCTGATATATCTGGTTGGGGAGCTTTCTTGAAGTATGTTCTTGATGCTTATCGGAAAGGTGACAAATTGAAGTTTGCTAATCATTCTCCAAATCCCAATTGTTATGCTAAGGTTATTATGGTGGCTGGGGACCACAGGGTGGGCATATTCGCCAAAGAACGGATTTGTGCTGGGGAAGAACTCTTTTACGATTACCGTTACGAGCCAGATAAAGCTCCTGCTTGGGCAAAGAAACCCATGGCCTCTGGTTCAAAAAAGGAGGACAACGCGCCTTCCAGTGGCCGTGCTAAGAAAATTGCTTGA

Network for GWHGAAZE014612

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00856.29	SET	735	791	8.30E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SET

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.003
	SRR3591706	second leaf	6.167
	SRR3591707	mature leaf	3.966
	SRR3591708	Shoot apex	15.907
	SRR3591709	Stem	7.494
	SRR3591710	White floral bud	6.803
	SRR3591711	White flower	6.908
	SRR3591712	Green floral bud	7.741
	SRR3591713	Yellow flower	6.712
SRP173429	SRR8316895	Juvenile bud stage	6.836
	SRR8316896	Juvenile bud stage	10.363
	SRR8316897	Juvenile bud stage	3.523
	SRR8316894	Third green stage	3.036
	SRR8316900	Third green stage	7.887
	SRR8316901	Third green stage	7.841
	SRR8316898	Complete white stage	2.137
	SRR8316899	Complete white stage	6.042
	SRR8316903	Complete white stage	4.545
	SRR8316902	Silver flowering stage	1.593
	SRR8316904	Silver flowering stage	2.615
	SRR8316905	Silver flowering stage	1.184
	SRR8316906	Gold flowering stage	2.915
	SRR8316907	Gold flowering stage	3.388
	SRR8316908	Gold flowering stage	3.257
SRP132670	SRR6706286	Control	2.771
	SRR6706287	Light intensity 50%	3.509
	SRR6706288	Light intensity 20%	3.748
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.112
	CNS0095593	Slightly white alabastrum(diploid) 2	6.270
	CNS0095594	Slightly white alabastrum(diploid) 3	8.343
	CNS0095595	Whole white alabastrum(diploid) 2	6.118
	CNS0095596	Whole white alabastrum(diploid) 3	5.899
	CNS0095597	Whole white alabastrum(diploid) 4	4.959
	CNS0095598	Silvery flower (diploied) 1	2.987
	CNS0095599	Silvery flower (diploied) 2	2.343
	CNS0095600	Silvery flower (diploied) 3	3.350
	CNS0095601	Golden flower (diploid) 1	2.475
	CNS0095602	Golden flower (diploid) 2	2.653
	CNS0095603	Golden flower (diploid) 3	1.794
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.547
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.240
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.927
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.659
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.095
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.959
	CNS0095610	Silvery flower (tetraploid) 1	4.946
	CNS0095611	Silvery flower (tetraploid) 2	3.195
	CNS0095612	Silvery flower (tetraploid) 3	4.807
	CNS0095613	Golden flower (tetraploid) 1	2.189
	CNS0095614	Golden flower (tetraploid) 2	3.829
	CNS0095615	Golden flower (tetraploid) 3	2.321
CRA001975	CRR073297	Stem 1	6.952
	CRR073298	Stem 2	5.925
	CRR073299	Stem 3	4.321
	CRR073300	Leaf 1	5.082
	CRR073301	Leaf 2	5.257
	CRR073302	Leaf 3	2.848
	CRR073303	Juvenile bud 1	2.549
	CRR073304	Juvenile bud 2	1.773
	CRR073305	Juvenile bud 3	1.700
	CRR073306	Third green 1	1.243
	CRR073307	Third green 2	1.367
	CRR073308	Third green 3	1.257
	CRR073309	Second white 1	0.892
	CRR073310	Second white 2	2.191
	CRR073311	Second white 3	0.858
	CRR073312	Silver flowering 1	0.735
	CRR073313	Silver flowering 2	0.852
	CRR073314	Silver flowering 3	0.804
	CRR073315	Gold flowering 1	0.672
	CRR073316	Gold flowering 2	2.036
	CRR073317	Gold flowering 3	0.265
	CRR073318	Tawny withering 1	4.709
	CRR073319	Tawny withering 2	2.491
	CRR073320	Tawny withering 3	4.376