Detail information of GWHGAAZE014615


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrNP_001267881.10transcription factor APETALA2 [Vitis vinifera]
Swissprottr|P47927|AP2_ARATH1E-131Floral homeotic protein APETALA 2
trEMBLtr|C1KBJ2|C1KBJ2_VITVI0Transcription factor APETALA2 {ECO:0000313|EMBL:ACO52508.1}
TAIR10AT4G36920.23E-103Integrase-type DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene1529915715302113-
GWHAAZE00000004mRNA1529915715302113-
GWHAAZE00000004exon1529915715299372-
GWHAAZE00000004exon1529950315299706-
GWHAAZE00000004exon1529980715299958-
GWHAAZE00000004exon1530031815300409-
GWHAAZE00000004exon1530053915300583-
GWHAAZE00000004exon1530077915300924-
GWHAAZE00000004exon1530109415301181-
GWHAAZE00000004exon1530126615301296-
GWHAAZE00000004exon1530140115301426-
GWHAAZE00000004exon1530161415302113-
GWHAAZE00000004CDS1530161415302113-
GWHAAZE00000004CDS1530140115301426-
GWHAAZE00000004CDS1530126615301296-
GWHAAZE00000004CDS1530109415301181-
GWHAAZE00000004CDS1530077915300924-
GWHAAZE00000004CDS1530053915300583-
GWHAAZE00000004CDS1530031815300409-
GWHAAZE00000004CDS1529980715299958-
GWHAAZE00000004CDS1529950315299706-
GWHAAZE00000004CDS1529915715299372-
Transcript Sequence

Network for GWHGAAZE014615

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00847.21AP21491977.30E-10
PF00847.21AP22402898.40E-10
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyAP2/ERF-AP2

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355biological_processregulation of transcription, DNA-templated
GO:0003700molecular_functionDNA-binding transcription factor activity
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.970
SRR3591706second leaf27.203
SRR3591707mature leaf56.141
SRR3591708Shoot apex19.992
SRR3591709Stem14.064
SRR3591710White floral bud40.836
SRR3591711White flower55.963
SRR3591712Green floral bud20.193
SRR3591713Yellow flower46.545
SRP173429 SRR8316895Juvenile bud stage 14.010
SRR8316896Juvenile bud stage 13.218
SRR8316897Juvenile bud stage 4.420
SRR8316894Third green stage 3.674
SRR8316900Third green stage 4.486
SRR8316901Third green stage 6.899
SRR8316898Complete white stage 8.584
SRR8316899Complete white stage 20.895
SRR8316903Complete white stage 14.403
SRR8316902Silver flowering stage12.470
SRR8316904Silver flowering stage15.570
SRR8316905Silver flowering stage8.951
SRR8316906Gold flowering stage 33.989
SRR8316907Gold flowering stage 36.415
SRR8316908Gold flowering stage 46.651
SRP132670SRR6706286Control12.408
SRR6706287Light intensity 50%12.131
SRR6706288Light intensity 20%9.505
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.553
CNS0095593Slightly white alabastrum(diploid) 29.860
CNS0095594Slightly white alabastrum(diploid) 36.548
CNS0095595Whole white alabastrum(diploid) 27.967
CNS0095596Whole white alabastrum(diploid) 32.342
CNS0095597Whole white alabastrum(diploid) 48.667
CNS0095598Silvery flower (diploied) 137.654
CNS0095599Silvery flower (diploied) 222.966
CNS0095600Silvery flower (diploied) 329.315
CNS0095601Golden flower (diploid) 121.534
CNS0095602Golden flower (diploid) 231.485
CNS0095603Golden flower (diploid) 330.585
CNS0095604Slightly white alabastrum(tetraploid) 112.764
CNS0095605Slightly white alabastrum(tetraploid) 210.426
CNS0095606Slightly white alabastrum(tetraploid) 326.152
CNS0095607Whole white alabastrum(tetraploid) 111.580
CNS0095608Whole white alabastrum(tetraploid) 23.051
CNS0095609Whole white alabastrum(tetraploid) 37.431
CNS0095610Silvery flower (tetraploid) 132.580
CNS0095611Silvery flower (tetraploid) 231.541
CNS0095612Silvery flower (tetraploid) 332.720
CNS0095613Golden flower (tetraploid) 120.987
CNS0095614Golden flower (tetraploid) 227.582
CNS0095615Golden flower (tetraploid) 327.872
CRA001975CRR073297Stem 121.950
CRR073298Stem 217.143
CRR073299Stem 314.502
CRR073300Leaf 17.625
CRR073301Leaf 28.101
CRR073302Leaf 33.795
CRR073303Juvenile bud 13.152
CRR073304Juvenile bud 23.742
CRR073305Juvenile bud 35.228
CRR073306Third green 120.312
CRR073307Third green 215.246
CRR073308Third green 318.116
CRR073309Second white 114.301
CRR073310Second white 219.834
CRR073311Second white 317.173
CRR073312Silver flowering 111.951
CRR073313Silver flowering 210.685
CRR073314Silver flowering 312.945
CRR073315Gold flowering 14.147
CRR073316Gold flowering 27.201
CRR073317Gold flowering 32.625
CRR073318Tawny withering 18.550
CRR073319Tawny withering 27.400
CRR073320Tawny withering 34.648