Detail information of GWHGAAZE014618


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002524919.11.30087E-52cyclin d, putative [Ricinus communis]
Swissprottr|Q9FGQ7|CCD32_ARATH1E-41Cyclin-D3-2
trEMBLtr|B9SG00|B9SG00_RICCO5E-53Cyclin d, putative {ECO:0000313|EMBL:EEF37416.1}
TAIR10AT5G67260.12E-35CYCLIN D3;2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene1548094415481348-
GWHAAZE00000004mRNA1548094415481348-
GWHAAZE00000004exon1548094415481348-
GWHAAZE00000004CDS1548094415481348-
Transcript Sequence

Network for GWHGAAZE014618

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02984.20Cyclin_C161218.50E-23
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14505CYCD3 Plant hormone signal transduction map04075

Gene Ontology

GO term OntologyName
GO:0005634cellular_componentnucleus

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.559
SRR3591706second leaf0.533
SRR3591707mature leaf0.000
SRR3591708Shoot apex6.110
SRR3591709Stem0.600
SRR3591710White floral bud0.933
SRR3591711White flower0.754
SRR3591712Green floral bud1.462
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.444
SRR8316896Juvenile bud stage 0.413
SRR8316897Juvenile bud stage 1.753
SRR8316894Third green stage 0.000
SRR8316900Third green stage 0.211
SRR8316901Third green stage 0.212
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.000
SRR8316903Complete white stage 0.008
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.000
SRR6706287Light intensity 50%0.151
SRR6706288Light intensity 20%0.000
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.000
CNS0095593Slightly white alabastrum(diploid) 20.000
CNS0095594Slightly white alabastrum(diploid) 30.000
CNS0095595Whole white alabastrum(diploid) 20.000
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 40.083
CNS0095598Silvery flower (diploied) 10.030
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.000
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.000
CNS0095603Golden flower (diploid) 30.000
CNS0095604Slightly white alabastrum(tetraploid) 10.962
CNS0095605Slightly white alabastrum(tetraploid) 20.266
CNS0095606Slightly white alabastrum(tetraploid) 33.324
CNS0095607Whole white alabastrum(tetraploid) 10.427
CNS0095608Whole white alabastrum(tetraploid) 20.907
CNS0095609Whole white alabastrum(tetraploid) 32.130
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.095
CNS0095612Silvery flower (tetraploid) 30.251
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.296
CRA001975CRR073297Stem 11.459
CRR073298Stem 21.447
CRR073299Stem 31.501
CRR073300Leaf 10.000
CRR073301Leaf 20.646
CRR073302Leaf 30.955
CRR073303Juvenile bud 10.495
CRR073304Juvenile bud 20.126
CRR073305Juvenile bud 30.244
CRR073306Third green 10.446
CRR073307Third green 20.023
CRR073308Third green 30.108
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.213
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.009
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.002
CRR073318Tawny withering 10.034
CRR073319Tawny withering 20.035
CRR073320Tawny withering 30.000