Detail information of GWHGAAZE014627


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP02534.10unnamed protein product [Coffea canephora]
Swissprottr|Q8RXK2|SDN3_ARATH4E-150Small RNA degrading nuclease 3
trEMBLtr|A0A068U2Z7|A0A068U2Z7_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313|EMBL:CDP02534.1}
TAIR10AT5G67240.15E-114small RNA degrading nuclease 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene1556051115566732-
GWHAAZE00000004mRNA1556051115566732-
GWHAAZE00000004exon1556670015566732-
GWHAAZE00000004exon1556607815566260-
GWHAAZE00000004exon1556588215565971-
GWHAAZE00000004exon1556421215564218-
GWHAAZE00000004exon1556403415564107-
GWHAAZE00000004exon1556369115563831-
GWHAAZE00000004exon1556345915563575-
GWHAAZE00000004exon1556331415563383-
GWHAAZE00000004exon1556257615562688-
GWHAAZE00000004exon1556194615562083-
GWHAAZE00000004exon1556176215561869-
GWHAAZE00000004exon1556131815561422-
GWHAAZE00000004exon1556051115560807-
GWHAAZE00000004CDS1556670015566732-
GWHAAZE00000004CDS1556607815566260-
GWHAAZE00000004CDS1556588215565971-
GWHAAZE00000004CDS1556421215564218-
GWHAAZE00000004CDS1556403415564107-
GWHAAZE00000004CDS1556369115563831-
GWHAAZE00000004CDS1556345915563575-
GWHAAZE00000004CDS1556331415563383-
GWHAAZE00000004CDS1556257615562688-
GWHAAZE00000004CDS1556194615562083-
GWHAAZE00000004CDS1556176215561869-
GWHAAZE00000004CDS1556131815561422-
GWHAAZE00000004CDS1556051115560807-
Transcript Sequence

Network for GWHGAAZE014627

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00929.25RNase_T1493021.20E-06
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14570REX1, REXO1, RNH70 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.314
SRR3591706second leaf5.583
SRR3591707mature leaf4.267
SRR3591708Shoot apex10.593
SRR3591709Stem3.545
SRR3591710White floral bud4.874
SRR3591711White flower7.582
SRR3591712Green floral bud6.474
SRR3591713Yellow flower5.304
SRP173429 SRR8316895Juvenile bud stage 7.065
SRR8316896Juvenile bud stage 8.174
SRR8316897Juvenile bud stage 4.513
SRR8316894Third green stage 2.615
SRR8316900Third green stage 9.616
SRR8316901Third green stage 7.052
SRR8316898Complete white stage 1.760
SRR8316899Complete white stage 11.251
SRR8316903Complete white stage 4.618
SRR8316902Silver flowering stage4.074
SRR8316904Silver flowering stage5.000
SRR8316905Silver flowering stage2.001
SRR8316906Gold flowering stage 7.030
SRR8316907Gold flowering stage 8.068
SRR8316908Gold flowering stage 9.795
SRP132670SRR6706286Control4.049
SRR6706287Light intensity 50%4.196
SRR6706288Light intensity 20%4.999
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.320
CNS0095593Slightly white alabastrum(diploid) 24.373
CNS0095594Slightly white alabastrum(diploid) 34.556
CNS0095595Whole white alabastrum(diploid) 24.072
CNS0095596Whole white alabastrum(diploid) 34.482
CNS0095597Whole white alabastrum(diploid) 43.756
CNS0095598Silvery flower (diploied) 16.467
CNS0095599Silvery flower (diploied) 25.062
CNS0095600Silvery flower (diploied) 35.850
CNS0095601Golden flower (diploid) 15.579
CNS0095602Golden flower (diploid) 25.452
CNS0095603Golden flower (diploid) 35.778
CNS0095604Slightly white alabastrum(tetraploid) 16.015
CNS0095605Slightly white alabastrum(tetraploid) 24.848
CNS0095606Slightly white alabastrum(tetraploid) 310.618
CNS0095607Whole white alabastrum(tetraploid) 14.977
CNS0095608Whole white alabastrum(tetraploid) 22.912
CNS0095609Whole white alabastrum(tetraploid) 35.486
CNS0095610Silvery flower (tetraploid) 16.263
CNS0095611Silvery flower (tetraploid) 27.885
CNS0095612Silvery flower (tetraploid) 36.616
CNS0095613Golden flower (tetraploid) 14.903
CNS0095614Golden flower (tetraploid) 26.026
CNS0095615Golden flower (tetraploid) 34.809
CRA001975CRR073297Stem 17.739
CRR073298Stem 26.566
CRR073299Stem 35.444
CRR073300Leaf 15.741
CRR073301Leaf 25.290
CRR073302Leaf 32.917
CRR073303Juvenile bud 16.079
CRR073304Juvenile bud 22.434
CRR073305Juvenile bud 33.105
CRR073306Third green 11.248
CRR073307Third green 20.650
CRR073308Third green 30.748
CRR073309Second white 10.702
CRR073310Second white 22.374
CRR073311Second white 32.732
CRR073312Silver flowering 11.518
CRR073313Silver flowering 22.465
CRR073314Silver flowering 32.103
CRR073315Gold flowering 11.963
CRR073316Gold flowering 24.014
CRR073317Gold flowering 32.303
CRR073318Tawny withering 14.335
CRR073319Tawny withering 22.953
CRR073320Tawny withering 35.153