Gene detail

Detail information of GWHGAAZE014636

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002524950.1	natural resistance-associated macrophage protein, putative [Ricinus communis]
Swissprot	tr\|Q9SNV9\|NRAM3_ARATH	Metal transporter Nramp3
trEMBL	tr\|B9SG31\|B9SG31_RICCO	Natural resistance-associated macrophage protein, putative {ECO:0000313\|EMBL:EEF37447.1}
TAIR10	AT2G23150.1	natural resistance-associated macrophage protein 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	15822262	15827164	+
GWHAAZE00000004	mRNA	15822262	15827164	+
GWHAAZE00000004	exon	15822262	15822875	+
GWHAAZE00000004	exon	15825633	15825769	+
GWHAAZE00000004	exon	15825877	15826529	+
GWHAAZE00000004	exon	15826961	15827164	+
GWHAAZE00000004	CDS	15822262	15822875	+
GWHAAZE00000004	CDS	15825633	15825769	+
GWHAAZE00000004	CDS	15825877	15826529	+
GWHAAZE00000004	CDS	15826961	15827164	+

Transcript Sequence
>GWHTAAZE014650 ACAAACACCACCTTCACCGTTACAAGCAACCCAAACTCATCAAAATCCACAAAACCCAAAAGCCAAGCCATGTCTCTTCACGAAGAAGAACAACAACGATTGCTAACCAATCCATCACTTGATTACGACGAGGAACAAGAAACCGCCTACTACTCGACAGAAAAAATCCACGTCATCGGCGTACACGAATCCCAAGAACAAGAAGAGGACTTCACCAAAACGCCACCGTTTTCATGGCGGAAGCTGTGGCTCTTCACTGGCCCGGGATTCCTAATGAGCATAGCCTTCCTGGATCCTGGGAACTTGGAGGGCAATCTTCAGGCGGGTGCGGTCGCAGGCTACTCTCTACTTTGGCTTCTCTTTTGGGCCACTGCTATGGGACTTCTTGTTCAGCTCCTCTCGGCTCGGCTCGGCGTGGCTACTGGCCGCCACTTGGCTGAGCTGTGTAGGGACGAGTACCCCAATTGGGCGAGGTTGCTTTTGTGGGTCATGGCTGAACTGGCATTGATCGGGGCTGACATACAGGAAGTTATTGGGAGTGCTATCGCTATTAAGATTTTGAGTAATGGTGTTTTGCCTCTTTGGGCTGGTGTCCTCATTACTGCCTCTGATTGTTTCATCTTCTTGTTTCTTGAGAACTACGGTGTCAGGAAATTAGAAGCCCTTTTCGCGGTCCTCATTGCAACCATGGCACTCTCCTTTGCATGGATGTTTGGTGAAACAAAGCCCAGTGGCATTGACCTTCTTCTCGGAACTTTGATTCCAAAACTGAGCTCTAGAACAATTCGACAGGCTGTGGGAGTTGTGGGCTGCATTATTATGCCTCACAATGTATTTCTACATTCTGCACTTGTACAGTCGAGAGATGTTGATCACCAAAAGATAGGACGAGTTCGAGAAGCACTCAATTACTACTCCATAGAGTCCACCATTGCCCTTGCAATCTCCTTCGTAATCAATCTGTTGGTTACAACTGTGTTTGCAAAGGCATTTTATGGAACTGAAGAAGCAAATAGTATTGGCCTTGAAAATGCGGGCCAGTATCTTGCGGAGAAATACGGTGGTGGTGTGCTTCCGATTTTGTACATCTGGGCCATTGGGCTATTAGCAGCTGGACAGAGTAGTACTATTACGGGAACTTATGCTGGGCAGTTTATAATGGGAGGTTTTTTGAACTTGCGCTTGAAGAAATGGCTGAGGGCACTGATCACGAGGAGCTTTGCTATTATACCAACTTTGATAGTTGCTCTGATTTTTGATACCTCTGAGGGTACATTGGATGTTCTTAATGAATGGCTCAATGTGCTTCAGTCAGCTCAGATTCCTTTTGCACTTATTCCTCTTCTATGTATAGTATCCAAGGAGTCGCTCATGGGTGTTTTCAAAATCGGCCCAGTTCTGAAGATGGTTTCATGGCTTGTGGCTGCCCTCGTGATGGTGATCAATGGGTATATGTTGCTTGAATTCTTCTCTTCTGAAGTAACTGGAGTGTTGTTTACTTCTGTTGTGTTTGCCATCACAGTTGCATATCTTGCGTTTGTACTATACCTTGTTTTTAGAAGCGTTACATTTTCCATATTCGGCCTTGACAAACCAAGTGGTTCATAA

Network for GWHGAAZE014636

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0084

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01566.19	Nramp	103	464	3.00E-119

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K21398	SLC11A2, DMT1, NRAMP2	Lysosome	map04142
		Ferroptosis	map04216
		Mineral absorption	map04978

Gene Ontology

GO term	Ontology	Name
GO:0030001	biological_process	metal ion transport
GO:0016020	cellular_component	membrane
GO:0046873	molecular_function	metal ion transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.510
	SRR3591706	second leaf	9.084
	SRR3591707	mature leaf	3.069
	SRR3591708	Shoot apex	12.845
	SRR3591709	Stem	23.304
	SRR3591710	White floral bud	14.732
	SRR3591711	White flower	8.892
	SRR3591712	Green floral bud	13.163
	SRR3591713	Yellow flower	3.547
SRP173429	SRR8316895	Juvenile bud stage	6.076
	SRR8316896	Juvenile bud stage	7.743
	SRR8316897	Juvenile bud stage	2.672
	SRR8316894	Third green stage	2.944
	SRR8316900	Third green stage	4.826
	SRR8316901	Third green stage	5.595
	SRR8316898	Complete white stage	4.240
	SRR8316899	Complete white stage	8.183
	SRR8316903	Complete white stage	4.948
	SRR8316902	Silver flowering stage	1.978
	SRR8316904	Silver flowering stage	1.762
	SRR8316905	Silver flowering stage	0.855
	SRR8316906	Gold flowering stage	2.056
	SRR8316907	Gold flowering stage	3.742
	SRR8316908	Gold flowering stage	3.816
SRP132670	SRR6706286	Control	4.520
	SRR6706287	Light intensity 50%	4.578
	SRR6706288	Light intensity 20%	6.111
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.641
	CNS0095593	Slightly white alabastrum(diploid) 2	6.833
	CNS0095594	Slightly white alabastrum(diploid) 3	7.854
	CNS0095595	Whole white alabastrum(diploid) 2	3.417
	CNS0095596	Whole white alabastrum(diploid) 3	3.622
	CNS0095597	Whole white alabastrum(diploid) 4	3.357
	CNS0095598	Silvery flower (diploied) 1	5.653
	CNS0095599	Silvery flower (diploied) 2	3.541
	CNS0095600	Silvery flower (diploied) 3	5.341
	CNS0095601	Golden flower (diploid) 1	4.514
	CNS0095602	Golden flower (diploid) 2	5.360
	CNS0095603	Golden flower (diploid) 3	5.440
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.995
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.162
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.307
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.641
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.692
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.756
	CNS0095610	Silvery flower (tetraploid) 1	6.736
	CNS0095611	Silvery flower (tetraploid) 2	6.071
	CNS0095612	Silvery flower (tetraploid) 3	5.224
	CNS0095613	Golden flower (tetraploid) 1	2.118
	CNS0095614	Golden flower (tetraploid) 2	5.556
	CNS0095615	Golden flower (tetraploid) 3	6.955
CRA001975	CRR073297	Stem 1	7.196
	CRR073298	Stem 2	6.977
	CRR073299	Stem 3	7.462
	CRR073300	Leaf 1	4.905
	CRR073301	Leaf 2	4.644
	CRR073302	Leaf 3	4.876
	CRR073303	Juvenile bud 1	4.554
	CRR073304	Juvenile bud 2	2.416
	CRR073305	Juvenile bud 3	4.405
	CRR073306	Third green 1	1.512
	CRR073307	Third green 2	2.117
	CRR073308	Third green 3	2.647
	CRR073309	Second white 1	0.786
	CRR073310	Second white 2	1.276
	CRR073311	Second white 3	1.207
	CRR073312	Silver flowering 1	0.493
	CRR073313	Silver flowering 2	0.460
	CRR073314	Silver flowering 3	0.994
	CRR073315	Gold flowering 1	0.899
	CRR073316	Gold flowering 2	2.091
	CRR073317	Gold flowering 3	1.262
	CRR073318	Tawny withering 1	10.009
	CRR073319	Tawny withering 2	8.975
	CRR073320	Tawny withering 3	11.863