Gene detail

Detail information of GWHGAAZE014644

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007205289.1	0	hypothetical protein PRUPE_ppa006659mg [Prunus persica]
Swissprot	tr\|Q08467\|CSK21_ARATH	0	Casein kinase II subunit alpha-1 (Precursor)
trEMBL	tr\|M5WB51\|M5WB51_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ06488.1}
TAIR10	AT5G67380.1	2E-171	casein kinase alpha 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	16010515	16016308	+
GWHAAZE00000004	mRNA	16010515	16016308	+
GWHAAZE00000004	exon	16010515	16010744	+
GWHAAZE00000004	exon	16011382	16011511	+
GWHAAZE00000004	exon	16011613	16011723	+
GWHAAZE00000004	exon	16011787	16011981	+
GWHAAZE00000004	exon	16013800	16013957	+
GWHAAZE00000004	exon	16014593	16014683	+
GWHAAZE00000004	exon	16014892	16014957	+
GWHAAZE00000004	exon	16015330	16015412	+
GWHAAZE00000004	exon	16015846	16015909	+
GWHAAZE00000004	exon	16016004	16016072	+
GWHAAZE00000004	exon	16016249	16016308	+
GWHAAZE00000004	CDS	16010515	16010744	+
GWHAAZE00000004	CDS	16011382	16011511	+
GWHAAZE00000004	CDS	16011613	16011723	+
GWHAAZE00000004	CDS	16011787	16011981	+
GWHAAZE00000004	CDS	16013800	16013957	+
GWHAAZE00000004	CDS	16014593	16014683	+
GWHAAZE00000004	CDS	16014892	16014957	+
GWHAAZE00000004	CDS	16015330	16015412	+
GWHAAZE00000004	CDS	16015846	16015909	+
GWHAAZE00000004	CDS	16016004	16016072	+
GWHAAZE00000004	CDS	16016249	16016308	+

Transcript Sequence
>GWHTAAZE014658 ATGCGCACAACAAACCCTCTCTTCCTATTCCGTATCTCTCTAATCTGCGCCCTCGTTGCCTTGCGTGCGCCGGTTGCGCATCCCCCTATCCTACGTCCCTTCCATAGCAACAACTCCGCCTCCGAGATCTACGACGATACGGCCATGTCTAAATCTCGAGTTTACGCCGACATCAATGTTATTCGTCCAAAGGAGTACTGGGATTACGAATCTCTCGCTGTTCAATGGGGTGACCAAGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAGTGAAGTTTTCGAAGGAATAAATGTCAATAGCAATGAGCGATGCATAATCAAGATTCTGAAGCCTGTTAAGAAGAAAAAGCAAATGTATCCTTATACATGGCCTGTTGCACGAGTGCATCCTCTAGTCCATGGTTTCTTGTGTGGTTGGCTTAGTTTATCAGTCGTGTATTGCGTTGCATTCTCAGAGCTCATAAAGAGAGAGATAAAAATACTACAGAACCTTTGTGGGGGCCCAAATATTGTGAAACTTCTTGATATAGTCCGAGATCAGCACTCAAAAACTCCTAGCTTGATTTTTGAGTTCGTGAACAGTACTGATTTCAAAGTGTTGTACCCCACATTGACGGATTACGACATTCGTTACTACATATATGAGCTTCTCAAGGCATTGGACTACTGTCACTCACAGGGTATAATGCACAGAGATGTTAAGCCTCACAATGTTATGATAGACCACGAGTTGCGGAAACTTCGCTTGATAGACTGGGGTCTTGCTGAGTTTTACCATCCAGGCAAAGAATATAATGTCCGTGTAGCTTCAAGATACTTTAAGGGGCCTGAACTTCTTGTTGATTTGCAAGACTACGACTACTCTTTGGATATGTGGAGCCTTGGTTGCATGTTTGCTGGAATGATATTCCGAAAAGAACCATTCTTTTATGGTCATGACAACCAAGATCAGCTTGTCAAAATTGCCAGGGTACTTGGGACAGATGAGCTAAATGCATATTTGAATAAATACCGTCTAGAGCTTGATCCACAACTCGAGGCGCTTGTTGGCAGGCACAGCAGGAAGCCCTGGTCCAAATTTATTAATGCAGATAACCAGCATCTAGTATCTCCAGAGGCTGTTGACTTCCTCGACAAGCTCCTTCGTTATGATCATCAGGATAGGCTCACTGCAAAAGAAGCAATGGCCCATCCATATTTCATGCAAGTGAGAGCTGCAGAAACTAGCAGGATGCGGACGCAGTAG

Network for GWHGAAZE014644

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	157	404	3.00E-55

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_CK2

KEGG pathway

KO	Enzyme	pathway	mapID
K03097	CSNK2A	Ribosome biogenesis in eukaryotes	map03008
		Wnt signaling pathway	map04310
		NF-kappa B signaling pathway	map04064
		Mitophagy - animal	map04137
		Mitophagy - yeast	map04139
		Adherens junction	map04520
		Circadian rhythm - plant	map04712

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	89.910
	SRR3591706	second leaf	43.581
	SRR3591707	mature leaf	33.917
	SRR3591708	Shoot apex	62.349
	SRR3591709	Stem	92.982
	SRR3591710	White floral bud	93.321
	SRR3591711	White flower	99.511
	SRR3591712	Green floral bud	68.507
	SRR3591713	Yellow flower	105.754
SRP173429	SRR8316895	Juvenile bud stage	40.334
	SRR8316896	Juvenile bud stage	54.676
	SRR8316897	Juvenile bud stage	27.700
	SRR8316894	Third green stage	21.749
	SRR8316900	Third green stage	63.816
	SRR8316901	Third green stage	54.353
	SRR8316898	Complete white stage	44.194
	SRR8316899	Complete white stage	96.099
	SRR8316903	Complete white stage	58.149
	SRR8316902	Silver flowering stage	52.480
	SRR8316904	Silver flowering stage	73.854
	SRR8316905	Silver flowering stage	40.667
	SRR8316906	Gold flowering stage	120.422
	SRR8316907	Gold flowering stage	109.838
	SRR8316908	Gold flowering stage	125.065
SRP132670	SRR6706286	Control	55.605
	SRR6706287	Light intensity 50%	60.329
	SRR6706288	Light intensity 20%	59.816
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	46.595
	CNS0095593	Slightly white alabastrum(diploid) 2	51.192
	CNS0095594	Slightly white alabastrum(diploid) 3	43.146
	CNS0095595	Whole white alabastrum(diploid) 2	47.779
	CNS0095596	Whole white alabastrum(diploid) 3	42.269
	CNS0095597	Whole white alabastrum(diploid) 4	44.864
	CNS0095598	Silvery flower (diploied) 1	68.723
	CNS0095599	Silvery flower (diploied) 2	56.243
	CNS0095600	Silvery flower (diploied) 3	89.612
	CNS0095601	Golden flower (diploid) 1	63.248
	CNS0095602	Golden flower (diploid) 2	83.569
	CNS0095603	Golden flower (diploid) 3	77.700
	CNS0095604	Slightly white alabastrum(tetraploid) 1	51.526
	CNS0095605	Slightly white alabastrum(tetraploid) 2	46.001
	CNS0095606	Slightly white alabastrum(tetraploid) 3	82.589
	CNS0095607	Whole white alabastrum(tetraploid) 1	46.025
	CNS0095608	Whole white alabastrum(tetraploid) 2	42.404
	CNS0095609	Whole white alabastrum(tetraploid) 3	65.373
	CNS0095610	Silvery flower (tetraploid) 1	110.612
	CNS0095611	Silvery flower (tetraploid) 2	108.353
	CNS0095612	Silvery flower (tetraploid) 3	96.132
	CNS0095613	Golden flower (tetraploid) 1	86.701
	CNS0095614	Golden flower (tetraploid) 2	103.040
	CNS0095615	Golden flower (tetraploid) 3	144.723
CRA001975	CRR073297	Stem 1	54.587
	CRR073298	Stem 2	50.808
	CRR073299	Stem 3	46.033
	CRR073300	Leaf 1	59.683
	CRR073301	Leaf 2	50.938
	CRR073302	Leaf 3	44.937
	CRR073303	Juvenile bud 1	48.644
	CRR073304	Juvenile bud 2	46.731
	CRR073305	Juvenile bud 3	49.027
	CRR073306	Third green 1	58.083
	CRR073307	Third green 2	48.598
	CRR073308	Third green 3	45.565
	CRR073309	Second white 1	39.266
	CRR073310	Second white 2	42.031
	CRR073311	Second white 3	40.638
	CRR073312	Silver flowering 1	30.160
	CRR073313	Silver flowering 2	26.287
	CRR073314	Silver flowering 3	27.484
	CRR073315	Gold flowering 1	25.431
	CRR073316	Gold flowering 2	33.618
	CRR073317	Gold flowering 3	23.297
	CRR073318	Tawny withering 1	48.696
	CRR073319	Tawny withering 2	44.393
	CRR073320	Tawny withering 3	47.859