Gene detail

Detail information of GWHGAAZE014647

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002284278.1	0	PREDICTED: peroxidase 73 [Vitis vinifera]
Swissprot	tr\|Q43873\|PER73_ARATH	2E-178	Peroxidase 73 (Precursor)
trEMBL	tr\|F6HSU5\|F6HSU5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB57755.1}
TAIR10	AT5G67400.1	3E-142	root hair specific 19

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	16045948	16048255	+
GWHAAZE00000004	mRNA	16045948	16048255	+
GWHAAZE00000004	exon	16045948	16046163	+
GWHAAZE00000004	exon	16046275	16046475	+
GWHAAZE00000004	exon	16046687	16046852	+
GWHAAZE00000004	exon	16047849	16048255	+
GWHAAZE00000004	CDS	16045948	16046163	+
GWHAAZE00000004	CDS	16046275	16046475	+
GWHAAZE00000004	CDS	16046687	16046852	+
GWHAAZE00000004	CDS	16047849	16048255	+

Transcript Sequence
>GWHTAAZE014661 ATGAACAGAATGATTCACATTAATGTTCTGTTGATAGTTGTGTGGTGTGTGATGTTCCCTAATTTGGCATCAGCACAACTTAGACAAAACTACTACGCCACCACTTGCCCCAATGTCGAAACTATCGTTAGAAATGTTGTAAATACTAAATTTAAACAGACCTTTGTTACAGTCCCCGCCACTCTCCGTCTCTTCTTCCATGACTGCTTTGTTCAGGGTTGTGATGCTTCAGTTATAATATCATCAAGTGGAAGAAATAAGGCCGAAAAGGATCACCCCGATAATCTATCGTTGGCTGGTGATGGATTTGATACGGTGATTAAGGCTAAAGCAGCTGTTGATGCTATCCCAAGTTGTAGAAATAAGGTCTCATGTGCTGACATTCTTACCATGGCCACCCGCGATGTCATTGCTCTGTCAGGGGGACCTTCGTATGCAGTAGAATTGGGAAGATTAGATGGGCTGAGTTCAACAGCTTCAAGTGTAAATGGGAAGCTGCCACAGGCCAATTTCAACTTGAATCAGCTCAATTCTTTGTTCGCTGCTAATGGCTTAACCCAGACAGATATGATTGCCCTCTCAGCGGCTCACAGTTTAGGATTCTCTCACTGTAACAAGTTCTCCAACCGGATATACAATTTCACCCGTCAAAATCCAGTGGACCCCACGCTCAACAAGGCGTACGCAACACAATTACAATCAATGTGTCCGAGGAATGTGGACCCTAGGATAGCCATCAATATGGACCCAAACACACCCAGAACCTTTGATAATGTTTACTTTAAGAATCTACAACAAGGCAAGGGCCTCTTCACCTCCGACCAAGTCCTCTTCACTGACACCAGATCCAAGCCCACCGTAAATACGTGGGCCTCCAACTCCGCCGCGTTCCAAAATGCATTCGTCACCGCCATGACCAAACTCGGCCGGGTCGGAGTCAAGACCGGAAGGAACGGAAATATTCGCCGTGATTGTGGCGCATTTAATTGA

Network for GWHGAAZE014647

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00141.24	peroxidase	43	292	2.70E-68

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00430	E1.11.1.7	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0042744	biological_process	hydrogen peroxide catabolic process
GO:0004601	molecular_function	peroxidase activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	53.578
	SRR3591706	second leaf	1.663
	SRR3591707	mature leaf	0.789
	SRR3591708	Shoot apex	19.789
	SRR3591709	Stem	24.246
	SRR3591710	White floral bud	1.889
	SRR3591711	White flower	4.749
	SRR3591712	Green floral bud	1.241
	SRR3591713	Yellow flower	7.105
SRP173429	SRR8316895	Juvenile bud stage	1.751
	SRR8316896	Juvenile bud stage	2.763
	SRR8316897	Juvenile bud stage	1.001
	SRR8316894	Third green stage	1.886
	SRR8316900	Third green stage	6.233
	SRR8316901	Third green stage	6.179
	SRR8316898	Complete white stage	17.840
	SRR8316899	Complete white stage	7.207
	SRR8316903	Complete white stage	17.498
	SRR8316902	Silver flowering stage	22.430
	SRR8316904	Silver flowering stage	17.198
	SRR8316905	Silver flowering stage	7.534
	SRR8316906	Gold flowering stage	8.427
	SRR8316907	Gold flowering stage	16.269
	SRR8316908	Gold flowering stage	24.142
SRP132670	SRR6706286	Control	5.539
	SRR6706287	Light intensity 50%	5.479
	SRR6706288	Light intensity 20%	5.848
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.931
	CNS0095593	Slightly white alabastrum(diploid) 2	8.573
	CNS0095594	Slightly white alabastrum(diploid) 3	16.048
	CNS0095595	Whole white alabastrum(diploid) 2	5.783
	CNS0095596	Whole white alabastrum(diploid) 3	12.710
	CNS0095597	Whole white alabastrum(diploid) 4	8.847
	CNS0095598	Silvery flower (diploied) 1	12.113
	CNS0095599	Silvery flower (diploied) 2	4.408
	CNS0095600	Silvery flower (diploied) 3	14.789
	CNS0095601	Golden flower (diploid) 1	2.328
	CNS0095602	Golden flower (diploid) 2	13.184
	CNS0095603	Golden flower (diploid) 3	13.117
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.048
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.782
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.029
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.152
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.788
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.275
	CNS0095610	Silvery flower (tetraploid) 1	29.158
	CNS0095611	Silvery flower (tetraploid) 2	28.200
	CNS0095612	Silvery flower (tetraploid) 3	12.462
	CNS0095613	Golden flower (tetraploid) 1	22.517
	CNS0095614	Golden flower (tetraploid) 2	7.957
	CNS0095615	Golden flower (tetraploid) 3	8.941
CRA001975	CRR073297	Stem 1	6.333
	CRR073298	Stem 2	6.680
	CRR073299	Stem 3	6.580
	CRR073300	Leaf 1	8.388
	CRR073301	Leaf 2	9.565
	CRR073302	Leaf 3	8.951
	CRR073303	Juvenile bud 1	11.205
	CRR073304	Juvenile bud 2	19.899
	CRR073305	Juvenile bud 3	15.022
	CRR073306	Third green 1	85.319
	CRR073307	Third green 2	93.697
	CRR073308	Third green 3	69.131
	CRR073309	Second white 1	4.400
	CRR073310	Second white 2	3.010
	CRR073311	Second white 3	0.796
	CRR073312	Silver flowering 1	1.964
	CRR073313	Silver flowering 2	15.625
	CRR073314	Silver flowering 3	11.440
	CRR073315	Gold flowering 1	3.461
	CRR073316	Gold flowering 2	1.746
	CRR073317	Gold flowering 3	2.134
	CRR073318	Tawny withering 1	93.975
	CRR073319	Tawny withering 2	85.017
	CRR073320	Tawny withering 3	43.368