Gene detail

Detail information of GWHGAAZE014652

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009618053.1	7.9128E-159	PREDICTED: casein kinase II subunit alpha, chloroplastic-like isoform X2 [Nicotiana tomentosiformis]
Swissprot	tr\|Q08467\|CSK21_ARATH	3E-134	Casein kinase II subunit alpha-1 (Precursor)
trEMBL	tr\|A5AYZ7\|A5AYZ7_VITVI	2E-151	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN71837.1}
TAIR10	AT5G67380.2	3E-102	casein kinase alpha 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	16095412	16104466	+
GWHAAZE00000004	mRNA	16095412	16104466	+
GWHAAZE00000004	exon	16095412	16095584	+
GWHAAZE00000004	exon	16096648	16096804	+
GWHAAZE00000004	exon	16100774	16100931	+
GWHAAZE00000004	exon	16103343	16103505	+
GWHAAZE00000004	exon	16103768	16103851	+
GWHAAZE00000004	exon	16104063	16104145	+
GWHAAZE00000004	exon	16104242	16104305	+
GWHAAZE00000004	exon	16104389	16104466	+
GWHAAZE00000004	CDS	16095412	16095584	+
GWHAAZE00000004	CDS	16096648	16096804	+
GWHAAZE00000004	CDS	16100774	16100931	+
GWHAAZE00000004	CDS	16103343	16103505	+
GWHAAZE00000004	CDS	16103768	16103851	+
GWHAAZE00000004	CDS	16104063	16104145	+
GWHAAZE00000004	CDS	16104242	16104305	+
GWHAAZE00000004	CDS	16104389	16104466	+

Transcript Sequence
>GWHTAAZE014666 CCACCATCGCACCGCCTCCGGCCGTACTTGTATCCGTCGGAAACCCTGGCACAGAGAATAGGAAAAGCTATACGCCGCCCGGGCGCAACCTCCAAGGCTAGGGTTTACGCAGAGGTCAATGTGATCCGCCCCAAGGATTACTGGGACTACGAGTCCCTTAACCTTCAATGGGGTACTTGTGAGTTTGATTTGTTGTTCAGGGAGCAGGATGATTACCAGGTTTTGAGGAAGGTTGGCAGGGGTAAATACAGTGAGGTGTTCGAGGGTGTTCACTCCACTGATAACAAGAAATGTATAGTTAAGATACTTAAACCGGTGAAGAAGAAGAAGGCATTAGATTACTGCCACTCCCAAGGTATCATGCATCGAGATGTGAAACCCCATAATGTGATGATTGATCATGAGCAGCGTAAGCTTCGTCTTATAGATTGGGGTCTTGCAGAGTTCTATCATCCTGGGAAAGAATATAATGTCCGTGTTGCTTCGAGATATTATAAAGGTCCCGAACTTCTTGTTGATCTGCAAGACTATGATTACTCTTTGGACTTGTGGAGCCTTGGTTGTATGTTTGCTGGAATGGTGAGCATATCATTCTCACCGTTTAGGTCGTTATTTTGTTTGTTTTTCTGCATCTCTCTTCAATTCAACATTAATGATTGTGCTGTACAGATATTCTGCAAGGAAACATTTTTCTACGGGCTAGATAATCATGATCAACTAGTCAAAATTGCCAAGGTACTTGGGACAGATGAATTGTATGCTTATTTAAGCAAGTACCGCTTAGAGTTAGACCCAAATCTCTCTGCCCTTGTTGGAAGGCATAGCAGAAAACCTTGGACAAGGTTCATTAACGCTGATAATCAACATATAGCTCTTCCAGAGGCAATTGACTTCCTAGACAAGCTGCTACGATATGATCATCAAGAAAGGCCAACAGCTAAAGAAGCAATGGTACTGTAG

Network for GWHGAAZE014652

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	110	195	6.20E-29

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_CK2

KEGG pathway

KO	Enzyme	pathway	mapID
K03097	CSNK2A	Ribosome biogenesis in eukaryotes	map03008
		Wnt signaling pathway	map04310
		NF-kappa B signaling pathway	map04064
		Mitophagy - animal	map04137
		Mitophagy - yeast	map04139
		Adherens junction	map04520
		Circadian rhythm - plant	map04712

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.943
	SRR3591706	second leaf	6.153
	SRR3591707	mature leaf	7.613
	SRR3591708	Shoot apex	15.980
	SRR3591709	Stem	18.777
	SRR3591710	White floral bud	8.596
	SRR3591711	White flower	12.062
	SRR3591712	Green floral bud	10.650
	SRR3591713	Yellow flower	13.957
SRP173429	SRR8316895	Juvenile bud stage	5.984
	SRR8316896	Juvenile bud stage	9.268
	SRR8316897	Juvenile bud stage	5.819
	SRR8316894	Third green stage	4.586
	SRR8316900	Third green stage	9.731
	SRR8316901	Third green stage	10.082
	SRR8316898	Complete white stage	3.629
	SRR8316899	Complete white stage	12.055
	SRR8316903	Complete white stage	6.251
	SRR8316902	Silver flowering stage	3.157
	SRR8316904	Silver flowering stage	6.824
	SRR8316905	Silver flowering stage	2.741
	SRR8316906	Gold flowering stage	11.571
	SRR8316907	Gold flowering stage	10.645
	SRR8316908	Gold flowering stage	9.789
SRP132670	SRR6706286	Control	7.231
	SRR6706287	Light intensity 50%	7.882
	SRR6706288	Light intensity 20%	8.057
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.029
	CNS0095593	Slightly white alabastrum(diploid) 2	9.255
	CNS0095594	Slightly white alabastrum(diploid) 3	8.624
	CNS0095595	Whole white alabastrum(diploid) 2	6.630
	CNS0095596	Whole white alabastrum(diploid) 3	6.582
	CNS0095597	Whole white alabastrum(diploid) 4	8.747
	CNS0095598	Silvery flower (diploied) 1	9.102
	CNS0095599	Silvery flower (diploied) 2	7.691
	CNS0095600	Silvery flower (diploied) 3	8.266
	CNS0095601	Golden flower (diploid) 1	7.978
	CNS0095602	Golden flower (diploid) 2	9.135
	CNS0095603	Golden flower (diploid) 3	9.421
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.866
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.053
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.208
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.051
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.093
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.702
	CNS0095610	Silvery flower (tetraploid) 1	7.175
	CNS0095611	Silvery flower (tetraploid) 2	6.027
	CNS0095612	Silvery flower (tetraploid) 3	6.783
	CNS0095613	Golden flower (tetraploid) 1	5.467
	CNS0095614	Golden flower (tetraploid) 2	6.925
	CNS0095615	Golden flower (tetraploid) 3	9.827
CRA001975	CRR073297	Stem 1	6.675
	CRR073298	Stem 2	7.020
	CRR073299	Stem 3	4.444
	CRR073300	Leaf 1	8.096
	CRR073301	Leaf 2	7.223
	CRR073302	Leaf 3	5.093
	CRR073303	Juvenile bud 1	3.578
	CRR073304	Juvenile bud 2	2.553
	CRR073305	Juvenile bud 3	5.333
	CRR073306	Third green 1	1.908
	CRR073307	Third green 2	1.655
	CRR073308	Third green 3	1.996
	CRR073309	Second white 1	2.644
	CRR073310	Second white 2	2.216
	CRR073311	Second white 3	3.049
	CRR073312	Silver flowering 1	2.555
	CRR073313	Silver flowering 2	2.908
	CRR073314	Silver flowering 3	2.857
	CRR073315	Gold flowering 1	2.095
	CRR073316	Gold flowering 2	4.146
	CRR073317	Gold flowering 3	2.537
	CRR073318	Tawny withering 1	5.612
	CRR073319	Tawny withering 2	4.625
	CRR073320	Tawny withering 3	6.698