Gene detail

Detail information of GWHGAAZE014668

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009801122.1	PREDICTED: probable amino-acid acetyltransferase NAGS1, chloroplastic isoform X2 [Nicotiana sylvestris]
Swissprot	tr\|Q84JF4\|NAGS1_ARATH	Probable amino-acid acetyltransferase NAGS1, chloroplastic (Precursor)
trEMBL	tr\|M1JBI9\|M1JBI9_SOLME	Calcium-dependent protein kinase 2 {ECO:0000313\|EMBL:AGE83531.1} (Fragment)
TAIR10	AT2G22910.1	N-acetyl-l-glutamate synthase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	16347290	16353243	-
GWHAAZE00000004	mRNA	16347290	16353243	-
GWHAAZE00000004	exon	16347290	16347443	-
GWHAAZE00000004	exon	16347808	16347880	-
GWHAAZE00000004	exon	16348490	16348649	-
GWHAAZE00000004	exon	16348748	16348859	-
GWHAAZE00000004	exon	16349339	16349436	-
GWHAAZE00000004	exon	16349700	16350189	-
GWHAAZE00000004	exon	16350836	16350987	-
GWHAAZE00000004	exon	16351143	16351348	-
GWHAAZE00000004	exon	16352355	16352632	-
GWHAAZE00000004	exon	16353176	16353243	-
GWHAAZE00000004	CDS	16353176	16353243	-
GWHAAZE00000004	CDS	16352355	16352632	-
GWHAAZE00000004	CDS	16351143	16351348	-
GWHAAZE00000004	CDS	16350836	16350987	-
GWHAAZE00000004	CDS	16349700	16350189	-
GWHAAZE00000004	CDS	16349339	16349436	-
GWHAAZE00000004	CDS	16348748	16348859	-
GWHAAZE00000004	CDS	16348490	16348649	-
GWHAAZE00000004	CDS	16347808	16347880	-
GWHAAZE00000004	CDS	16347290	16347443	-

Transcript Sequence
>GWHTAAZE014682 ATGCTCCTTACTTCACTTCCATACTTGAGGTATTTATATATATATATACATACACTTGATCGTCTTGGACCTGGAAATGGTCCCGTCCGTCCATTCCGCGGTCTCCGTTCCATAAATCTCTTTAAGGGTAATTCCAGCGATAAAAATCCGGGGAGATGTAATGCTTGGGAGGAAAGAGTGAGTGGCGGTGCTGCTGAAGCAATTAATGCTGTAAAAGACGATCAGTTCGTTCACTTTTTCCGTGAAGCTTGGCCGTATTTTCAAGCTCACCGAGGCAGTACTTTTGTTGTTCTAATTTCTGCTGAACTTGTTGACAGTCCTTATTTGGATACCATTCTCATGGCAAGAAGTGAGCCCAAGTATGTTGGCCGGTACAGAATTACAGACTCTGATTCTCTCAAGGCGGCGATGGACGCAGCTGGGAGAATTCGTATTATGATAGAGGCAAAACTATCTCCTGGACCCTCGTTGTGCAATATCCGTCGACATGGTGACAATAGGCGCTGGCATGATGGTGTCGGTGTCGTTGGTGGTAACTTTCTTGCAGCTAAGAGAAGAGGGGTTGTTGAAGGCATAGATTATGGATCGACAGGTGAAGTTAAGAAAATAGATGTTGCTCGCATTCGTGAGAGGCTGGACCAGGATTCTATAGTGATCTTAAGCAACCTCGGTTATTCCAGCTCTGGAGAAGTATTAAATTGCAACACATATGAAGTTGCTACAGCTTGTGCCTTGGCTCTTGGAGCAGAGAAACTTATTTGCATTATCGATGGCCCGATTTTGGACGAGCATGGACGTCTTATTCAGTTTTTGACTCTTCAAGATGCGGACTTGTTGATTCGAAATAGAGCCAAGCAAAGTGAGATAGCCGCTAATTATGTGGAAGCTGTTGGTCAAGAAGATCTCACTTGTGTTGGCCATAATAATGATTTCAACGGCATGGTCCTTCAACAGAACAGAACGGGTTTAATTGATACTCATGATCATAATGGTTTCACTGGAACAACAGTCCCTTCACAGAAGGGGAATAGTTTCAGTCATAGGTATAGTCCCACATTTCAAAATGGTGTTGGTTTCGACCACGGGAATGGACTATGGTCCAGTGAACAAGGGTTTGCCATTGGGGGTCAAGAGAGGTTGAGTCGATTGAATGGTTACCTTTCAGAATTGGCTGCTGCAGCTTTTGTGTGCAGAGGAGGTGTTCAAAGAGTTCATCTACTAGACGGCACTATAGCTGGAGTGTTATTAAAGGAATTGTTTCAAAGGGATGGAGTTGGTACGATGGTGGCTAGTGATCTTTATGAAGGAACACGGATGGCTAAAGTGACGGATTTTTCCACAATAAGACAACTTTTACAACCATTAGAAGAATCTGGAACATTGGTCAGACGGACTGACGAAGAGTTACTCGAAGCGTTGCATTCATTCATTGTTGTGGAGAGAGAGGGTCATATTATTGCATGTGCTGCTCTGTTTCCTTTCTATGACGAAAAGTGCGGGGAGGTTGCTGCTATTGCTGTTTCTCCTGATTGCCGTGGACAAGGACAGGGCGATAAATTACTTGATTATATTGAGAAGAAGGCATCTTCACTTGGACTGCAAATGCTTTTCTTGCTTACAACCCGCACAGCTGATTGGTTTGTGAGGCGTGGATTTTCAGAGTGTTCCATCGAATCAATACCAGCGGAGAGGAGGAAAAAGATAAATCTATCGCGTAGATCTAAATATTACATGAAGCGGCTGCTTCCTGACATGAGTGGAATTCGTTTTGATAGCATCTTCGCTTCTTGA

Network for GWHGAAZE014668

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00696.29	AA_kinase	186	275	4.80E-06
PF00583.26	Acetyltransf_1	466	540	2.50E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GNAT

KEGG pathway

KO	Enzyme	pathway	mapID
K14682	argAB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		2-Oxocarboxylic acid metabolism	map01210
		Biosynthesis of amino acids	map01230
		Arginine biosynthesis	map00220

Gene Ontology

GO term	Ontology	Name
GO:0006526	biological_process	arginine biosynthetic process
GO:0005737	cellular_component	cytoplasm
GO:0004042	molecular_function	acetyl-CoA:L-glutamate N-acetyltransferase activity
GO:0008080	molecular_function	N-acetyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.462
	SRR3591706	second leaf	11.586
	SRR3591707	mature leaf	14.081
	SRR3591708	Shoot apex	11.571
	SRR3591709	Stem	27.308
	SRR3591710	White floral bud	10.098
	SRR3591711	White flower	10.439
	SRR3591712	Green floral bud	9.540
	SRR3591713	Yellow flower	11.179
SRP173429	SRR8316895	Juvenile bud stage	12.959
	SRR8316896	Juvenile bud stage	16.279
	SRR8316897	Juvenile bud stage	7.877
	SRR8316894	Third green stage	7.579
	SRR8316900	Third green stage	25.695
	SRR8316901	Third green stage	21.427
	SRR8316898	Complete white stage	5.439
	SRR8316899	Complete white stage	24.340
	SRR8316903	Complete white stage	7.747
	SRR8316902	Silver flowering stage	2.952
	SRR8316904	Silver flowering stage	4.756
	SRR8316905	Silver flowering stage	2.691
	SRR8316906	Gold flowering stage	9.898
	SRR8316907	Gold flowering stage	8.651
	SRR8316908	Gold flowering stage	13.418
SRP132670	SRR6706286	Control	22.915
	SRR6706287	Light intensity 50%	22.917
	SRR6706288	Light intensity 20%	24.276
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.290
	CNS0095593	Slightly white alabastrum(diploid) 2	13.305
	CNS0095594	Slightly white alabastrum(diploid) 3	13.991
	CNS0095595	Whole white alabastrum(diploid) 2	13.905
	CNS0095596	Whole white alabastrum(diploid) 3	14.128
	CNS0095597	Whole white alabastrum(diploid) 4	9.886
	CNS0095598	Silvery flower (diploied) 1	20.734
	CNS0095599	Silvery flower (diploied) 2	14.316
	CNS0095600	Silvery flower (diploied) 3	15.046
	CNS0095601	Golden flower (diploid) 1	20.051
	CNS0095602	Golden flower (diploid) 2	29.897
	CNS0095603	Golden flower (diploid) 3	27.344
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.556
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.761
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.410
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.718
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.512
	CNS0095609	Whole white alabastrum(tetraploid) 3	25.779
	CNS0095610	Silvery flower (tetraploid) 1	21.042
	CNS0095611	Silvery flower (tetraploid) 2	26.322
	CNS0095612	Silvery flower (tetraploid) 3	15.859
	CNS0095613	Golden flower (tetraploid) 1	17.069
	CNS0095614	Golden flower (tetraploid) 2	28.354
	CNS0095615	Golden flower (tetraploid) 3	15.075
CRA001975	CRR073297	Stem 1	20.459
	CRR073298	Stem 2	20.264
	CRR073299	Stem 3	16.548
	CRR073300	Leaf 1	22.106
	CRR073301	Leaf 2	20.009
	CRR073302	Leaf 3	21.580
	CRR073303	Juvenile bud 1	13.392
	CRR073304	Juvenile bud 2	12.570
	CRR073305	Juvenile bud 3	15.148
	CRR073306	Third green 1	2.206
	CRR073307	Third green 2	1.057
	CRR073308	Third green 3	3.762
	CRR073309	Second white 1	5.665
	CRR073310	Second white 2	2.985
	CRR073311	Second white 3	4.000
	CRR073312	Silver flowering 1	6.181
	CRR073313	Silver flowering 2	7.749
	CRR073314	Silver flowering 3	6.807
	CRR073315	Gold flowering 1	15.783
	CRR073316	Gold flowering 2	25.525
	CRR073317	Gold flowering 3	18.713
	CRR073318	Tawny withering 1	18.778
	CRR073319	Tawny withering 2	27.219
	CRR073320	Tawny withering 3	17.520