Gene detail

Detail information of GWHGAAZE014681

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003635376.1	4.7592E-157	PREDICTED: growth-regulating factor 1-like [Vitis vinifera]
Swissprot	tr\|Q6AWY3\|GRF6_ORYSJ	2E-70	Growth-regulating factor 6
trEMBL	tr\|F6HRI9\|F6HRI9_VITVI	2E-157	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB57297.1}
TAIR10	AT2G22840.1	3E-39	growth-regulating factor 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	16526857	16532592	-
GWHAAZE00000004	mRNA	16526857	16532592	-
GWHAAZE00000004	exon	16526857	16527652	-
GWHAAZE00000004	exon	16528535	16528865	-
GWHAAZE00000004	exon	16528934	16529104	-
GWHAAZE00000004	exon	16529340	16529564	-
GWHAAZE00000004	exon	16532148	16532592	-
GWHAAZE00000004	CDS	16532148	16532592	-
GWHAAZE00000004	CDS	16529340	16529564	-
GWHAAZE00000004	CDS	16528934	16529104	-
GWHAAZE00000004	CDS	16528535	16528865	-
GWHAAZE00000004	CDS	16526857	16527652	-

Transcript Sequence
>GWHTAAZE014695 ATGGATTCAGATTGTGTTGGGTCCGAACCCGACACCAGAAACCCGAATAAGAATCACGGATCTGGGTTTCTCCTGACGCAAGACAGATCTGGGTTCGGTGAAGATCACATTCACAACTGGAGGAGCTCCAAAACTTGTAGAACAACAACAACAACAACAACAACAACAGATGATGCATTTGAAGCCCCCAGAACGATGTCGTATCAGCAGCAGCAGGGGACTACTCTGCTGAGATCTAACTCTAGGATTTCTTCTCCCGGTGATGGTATTGGTAACGGAAGTACTCAAAACATGCTTAACTTTTCTAGTCCTAGTAATAATAATAATAATAATGCTGGTGAAGAAGCTCCGTTTTCAAGTAAAAATGGCGGGTTAGTTGAGAGGAGTAACCAGAACCCACCATTTCGTCTCTATCAGCAACCCCCTTCCTACATTAGAAATGCAGGGTATGGTTCTGGAGCAATGAATGCGAGCTTGCATTCTCCTTTTGCTAGGTATAGAGGGCCATTTACTCCGTCTCAGTGGATGGAACTGGAACACCAAGCTTTGATTTACAAACACATTGTGGCAAATGCGCCTATTCCCTCCAATTTGCTCATTTCCCTCAGGAAATCTCTCAACTCTTTTGCATTTTTGGGGTCCTCTTCTGGATCCTATGCTCCCAATTCATATCTGGAGGCTGCCCCAGTGGCTGTGATTGTGTACTTCAATATAGGCAGCCATGGTTTAATCCCAGTTCCCCGTGCACACACACGAATCCCATATCTATGCAATTTATTGCTGTATAAGAAAGGAAAAAAAAGTTGGCGTCTTCGTTATCCATATTTTGAAAAAGGAACTGGCAACTCCTCAGACCCAGAGCCGGGGAGGTGCCGACGAACGGACGGAAAGAAATGGCGGTGCTCGAGAGATGCTGTCCCTGAACAGAAATACTGTGAAAGGCACATAAACAGGGGCCGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAAAATGGCCATGCTGTCTCTGGATCAACTACTTCTTCAAGGGTGGTGCTGCCGATGGCTTCCTCCCCATCAGCGTCGGTATTGTCCAGTGGCGGAACTAAGATTAGCCTCGGTCCCACGAAGCTCCAGCTTGAGAGCTTGCAGCCTGTGGGTCCCAATCCTTTCATGGACACCGTCATCAACAGTAGAAAGGTCCTTCGTACTTTTGTGGGCACCTATGTCTTTTCACTATTCATCCTCATTCCCCTTGTTATTACTAACTATACACGCACATTATTAATACACATGAATGGCAGAATGCAAGACAACAAAGCCCCTTCCATGATATCTCCTACCATCAGCCTCAAGTCTAAAGACTCTCCATTCTCTATACCGAAAAGCGTCACATTTGAGGAATCCTCTAACTCGGAATTCGGACACATATCCACGGATTCCCTAATCTGCCCTTCGCAGAAAAGCTCCAACACGAATATCCGGAGCTCCAATTCTTTCATGGGCTTCGATGACCACGATTGGGCCAAGGACCAATCAGATCGATCCACCATTACTTGGGCTGAGGGGCTTAAATCAGACTGGACCTGCCTATCGATGTCGATCCCAATGGTTTCCTCGGACTTCTCATCGTCCTCGAACTCTCCTCCCCAAGAGAAACTTGCCCTCTCGCCACTAAGCCTTACCCACGAGTTTGATCCGATCCAGTTAGGCGAACCAGCCCACAAGCAAACGAATTGGATCCCAGTTTCGTGCAGAAATTCAATGGGGGGCCCGCTGGGGGAGGTGCTGAACAGCACGTCTACCGAGAGAGGTTCCAAGAACTCTTCGGCACTGAACCTAATGACCGAGGTGTGGGATGGTGGGGCCCATTTGGGGTCTTCGCCCACTGGGGTGTTGCAGAAGGCGAGTTTCGTTTCACTTTCGAATGGCAGTTCGGGGAGTAGTCCAAGAGGTGAGAAGAACGGACCTCGAGGCGGTAGCTTTTGA

Network for GWHGAAZE014681

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08880.12	QLQ	169	201	1.00E-14
PF08879.11	WRC	286	328	1.20E-20

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GRF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0005634	cellular_component	nucleus
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.223
	SRR3591706	second leaf	6.708
	SRR3591707	mature leaf	1.477
	SRR3591708	Shoot apex	20.097
	SRR3591709	Stem	5.310
	SRR3591710	White floral bud	0.949
	SRR3591711	White flower	1.235
	SRR3591712	Green floral bud	2.001
	SRR3591713	Yellow flower	0.201
SRP173429	SRR8316895	Juvenile bud stage	3.653
	SRR8316896	Juvenile bud stage	2.588
	SRR8316897	Juvenile bud stage	1.799
	SRR8316894	Third green stage	1.225
	SRR8316900	Third green stage	2.080
	SRR8316901	Third green stage	1.785
	SRR8316898	Complete white stage	0.140
	SRR8316899	Complete white stage	2.113
	SRR8316903	Complete white stage	0.683
	SRR8316902	Silver flowering stage	0.126
	SRR8316904	Silver flowering stage	0.066
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.223
	SRR8316907	Gold flowering stage	0.483
	SRR8316908	Gold flowering stage	0.236
SRP132670	SRR6706286	Control	2.552
	SRR6706287	Light intensity 50%	2.811
	SRR6706288	Light intensity 20%	2.517
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.754
	CNS0095593	Slightly white alabastrum(diploid) 2	2.887
	CNS0095594	Slightly white alabastrum(diploid) 3	2.498
	CNS0095595	Whole white alabastrum(diploid) 2	1.975
	CNS0095596	Whole white alabastrum(diploid) 3	2.241
	CNS0095597	Whole white alabastrum(diploid) 4	2.067
	CNS0095598	Silvery flower (diploied) 1	2.323
	CNS0095599	Silvery flower (diploied) 2	1.600
	CNS0095600	Silvery flower (diploied) 3	0.982
	CNS0095601	Golden flower (diploid) 1	1.184
	CNS0095602	Golden flower (diploid) 2	1.394
	CNS0095603	Golden flower (diploid) 3	0.581
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.654
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.782
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.595
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.451
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.660
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.268
	CNS0095610	Silvery flower (tetraploid) 1	0.399
	CNS0095611	Silvery flower (tetraploid) 2	1.062
	CNS0095612	Silvery flower (tetraploid) 3	0.232
	CNS0095613	Golden flower (tetraploid) 1	0.818
	CNS0095614	Golden flower (tetraploid) 2	0.580
	CNS0095615	Golden flower (tetraploid) 3	0.157
CRA001975	CRR073297	Stem 1	6.169
	CRR073298	Stem 2	4.508
	CRR073299	Stem 3	9.414
	CRR073300	Leaf 1	1.890
	CRR073301	Leaf 2	3.890
	CRR073302	Leaf 3	2.929
	CRR073303	Juvenile bud 1	1.411
	CRR073304	Juvenile bud 2	1.506
	CRR073305	Juvenile bud 3	1.706
	CRR073306	Third green 1	0.300
	CRR073307	Third green 2	0.198
	CRR073308	Third green 3	0.211
	CRR073309	Second white 1	0.174
	CRR073310	Second white 2	0.163
	CRR073311	Second white 3	0.038
	CRR073312	Silver flowering 1	0.056
	CRR073313	Silver flowering 2	0.216
	CRR073314	Silver flowering 3	0.234
	CRR073315	Gold flowering 1	1.245
	CRR073316	Gold flowering 2	0.961
	CRR073317	Gold flowering 3	1.241
	CRR073318	Tawny withering 1	4.947
	CRR073319	Tawny withering 2	3.890
	CRR073320	Tawny withering 3	3.853