Detail information of GWHGAAZE014697


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrNP_001275280.10branched-chain amino acid aminotransferase [Solanum tuberosum]
Swissprottr|Q9FYA6|BCAT5_ARATH0Branched-chain-amino-acid aminotransferase 5, chloroplastic (Precursor)
trEMBLtr|Q9SNY8|Q9SNY8_SOLTU0Branched-chain-amino-acid aminotransferase {ECO:0000256|RuleBase:RU004517}
TAIR10AT5G65780.12E-151branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene1679964816806504-
GWHAAZE00000004mRNA1679964816806504-
GWHAAZE00000004exon1679964816799765-
GWHAAZE00000004exon1680085416800966-
GWHAAZE00000004exon1680121116801306-
GWHAAZE00000004exon1680205216802168-
GWHAAZE00000004exon1680279316802891-
GWHAAZE00000004exon1680308516803216-
GWHAAZE00000004exon1680330516803481-
GWHAAZE00000004exon1680540416805703-
GWHAAZE00000004exon1680617416806248-
GWHAAZE00000004exon1680636716806504-
GWHAAZE00000004CDS1680636716806504-
GWHAAZE00000004CDS1680617416806248-
GWHAAZE00000004CDS1680540416805703-
GWHAAZE00000004CDS1680330516803481-
GWHAAZE00000004CDS1680308516803216-
GWHAAZE00000004CDS1680279316802891-
GWHAAZE00000004CDS1680205216802168-
GWHAAZE00000004CDS1680121116801306-
GWHAAZE00000004CDS1680085416800966-
GWHAAZE00000004CDS1679964816799765-
Transcript Sequence

Network for GWHGAAZE014697

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01063.20Aminotran_41724101.20E-41
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00826E2.6.1.42, ilvE Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Cysteine and methionine metabolismmap00270
Valine, leucine and isoleucine degradationmap00280
Valine, leucine and isoleucine biosynthesismap00290
Pantothenate and CoA biosynthesismap00770
Glucosinolate biosynthesismap00966

Gene Ontology

GO term OntologyName
GO:0009081biological_processbranched-chain amino acid metabolic process
GO:0004084molecular_functionbranched-chain-amino-acid transaminase activity
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.989
SRR3591706second leaf2.091
SRR3591707mature leaf2.476
SRR3591708Shoot apex11.471
SRR3591709Stem6.098
SRR3591710White floral bud18.695
SRR3591711White flower16.007
SRR3591712Green floral bud18.678
SRR3591713Yellow flower26.423
SRP173429 SRR8316895Juvenile bud stage 10.414
SRR8316896Juvenile bud stage 17.176
SRR8316897Juvenile bud stage 6.798
SRR8316894Third green stage 6.328
SRR8316900Third green stage 13.900
SRR8316901Third green stage 13.672
SRR8316898Complete white stage 4.288
SRR8316899Complete white stage 10.095
SRR8316903Complete white stage 4.475
SRR8316902Silver flowering stage4.884
SRR8316904Silver flowering stage6.081
SRR8316905Silver flowering stage2.333
SRR8316906Gold flowering stage 20.168
SRR8316907Gold flowering stage 9.199
SRR8316908Gold flowering stage 19.785
SRP132670SRR6706286Control8.489
SRR6706287Light intensity 50%8.383
SRR6706288Light intensity 20%8.910
CNP0000432CNS0095592Slightly white alabastrum(diploid) 113.086
CNS0095593Slightly white alabastrum(diploid) 29.628
CNS0095594Slightly white alabastrum(diploid) 312.355
CNS0095595Whole white alabastrum(diploid) 211.089
CNS0095596Whole white alabastrum(diploid) 312.180
CNS0095597Whole white alabastrum(diploid) 48.973
CNS0095598Silvery flower (diploied) 17.465
CNS0095599Silvery flower (diploied) 27.262
CNS0095600Silvery flower (diploied) 38.680
CNS0095601Golden flower (diploid) 17.014
CNS0095602Golden flower (diploid) 28.473
CNS0095603Golden flower (diploid) 37.540
CNS0095604Slightly white alabastrum(tetraploid) 110.902
CNS0095605Slightly white alabastrum(tetraploid) 28.823
CNS0095606Slightly white alabastrum(tetraploid) 34.328
CNS0095607Whole white alabastrum(tetraploid) 17.554
CNS0095608Whole white alabastrum(tetraploid) 28.608
CNS0095609Whole white alabastrum(tetraploid) 38.850
CNS0095610Silvery flower (tetraploid) 13.662
CNS0095611Silvery flower (tetraploid) 21.731
CNS0095612Silvery flower (tetraploid) 34.729
CNS0095613Golden flower (tetraploid) 13.072
CNS0095614Golden flower (tetraploid) 24.142
CNS0095615Golden flower (tetraploid) 30.464
CRA001975CRR073297Stem 110.926
CRR073298Stem 28.453
CRR073299Stem 39.086
CRR073300Leaf 110.298
CRR073301Leaf 29.334
CRR073302Leaf 38.858
CRR073303Juvenile bud 18.864
CRR073304Juvenile bud 27.795
CRR073305Juvenile bud 36.931
CRR073306Third green 14.126
CRR073307Third green 22.786
CRR073308Third green 33.277
CRR073309Second white 15.114
CRR073310Second white 23.690
CRR073311Second white 34.976
CRR073312Silver flowering 18.065
CRR073313Silver flowering 27.330
CRR073314Silver flowering 37.417
CRR073315Gold flowering 15.939
CRR073316Gold flowering 29.161
CRR073317Gold flowering 37.264
CRR073318Tawny withering 18.928
CRR073319Tawny withering 28.624
CRR073320Tawny withering 36.436