Gene detail

Detail information of GWHGAAZE014703

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009605643.1	1.20392E-90	PREDICTED: E3 ubiquitin-protein ligase FANCL isoform X1 [Nicotiana tomentosiformis]
trEMBL	tr\|F4JXJ5\|F4JXJ5_ARATH	5E-85	Zinc ion binding protein {ECO:0000313\|EMBL:AED98100.1}
TAIR10	AT5G65740.4	4E-70	zinc ion binding

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	16922579	16926563	+
GWHAAZE00000004	mRNA	16922579	16926563	+
GWHAAZE00000004	exon	16922579	16922593	+
GWHAAZE00000004	exon	16922677	16922748	+
GWHAAZE00000004	exon	16923867	16923941	+
GWHAAZE00000004	exon	16924113	16924233	+
GWHAAZE00000004	exon	16924631	16924658	+
GWHAAZE00000004	exon	16925712	16925842	+
GWHAAZE00000004	exon	16926092	16926215	+
GWHAAZE00000004	exon	16926488	16926563	+
GWHAAZE00000004	CDS	16922579	16922593	+
GWHAAZE00000004	CDS	16922677	16922748	+
GWHAAZE00000004	CDS	16923867	16923941	+
GWHAAZE00000004	CDS	16924113	16924233	+
GWHAAZE00000004	CDS	16924631	16924658	+
GWHAAZE00000004	CDS	16925712	16925842	+
GWHAAZE00000004	CDS	16926092	16926215	+
GWHAAZE00000004	CDS	16926488	16926563	+

Transcript Sequence
>GWHTAAZE014717 ATGAGCGCCAACTTGGTAGGCACTGAGCAGACTAGATGTCGAGAGTTGGCATTGTCATCTTCGTTTTACCGCACAATTTATTCAGAGGATGTACCTTATATCTTTAATTTGGAATGGTCCATAAACTCAAGACTGAAAGATGTTGTGCAGCAATTCCAACAGCACGTGGATAAGCTTCAGGAATTTTGGTCTACAATGGATGATATCGATCACTCCCTTTGGGTTATTGATTTGAAACAGGCACACCGTGCTACTCCATATCGCTTAATCAATATAGATGAAGGTGTCGCTTTATGGGTTCAGATCAAAAGGATGAATGACAAACGACTTCCTGAAAATCTTGCGAATGTATTGGAGATTCAACTTCCAGGACCTCCAGGCGTCCAGAAAAATGATCAGCAAAATGAATGTGGAATTTGTTATGCACAATTTCTTCCCATTGATGACGAACTTGGAGCTAAGAGTGGAAGCGCAACTGATTATACATGTGATAATATCACCTGCAATAGGACTTTCCATAGTGTTTGTCTTGGGGATTGGTTGCGTTCTATCACCACAAGAAGGCAGTCATTTGATGTTCTGTTTGGGAACTGCCCCTACTGTTCAGAGCCAGTTGCAGTGAAAATCAACACCAAGAAGTAA

Network for GWHGAAZE014703

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF11793.9	FANCL_C	133	209	7.10E-30

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
K10606	FANCL, PHF9	Ubiquitin mediated proteolysis	map04120
K10606	FANCL, PHF9	Fanconi anemia pathway	map03460

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.653
	SRR3591706	second leaf	0.547
	SRR3591707	mature leaf	1.303
	SRR3591708	Shoot apex	11.209
	SRR3591709	Stem	5.187
	SRR3591710	White floral bud	4.295
	SRR3591711	White flower	6.332
	SRR3591712	Green floral bud	4.266
	SRR3591713	Yellow flower	4.393
SRP173429	SRR8316895	Juvenile bud stage	12.596
	SRR8316896	Juvenile bud stage	23.625
	SRR8316897	Juvenile bud stage	5.233
	SRR8316894	Third green stage	8.937
	SRR8316900	Third green stage	9.345
	SRR8316901	Third green stage	12.239
	SRR8316898	Complete white stage	3.324
	SRR8316899	Complete white stage	10.212
	SRR8316903	Complete white stage	6.100
	SRR8316902	Silver flowering stage	2.479
	SRR8316904	Silver flowering stage	4.524
	SRR8316905	Silver flowering stage	0.989
	SRR8316906	Gold flowering stage	5.190
	SRR8316907	Gold flowering stage	4.421
	SRR8316908	Gold flowering stage	3.123
SRP132670	SRR6706286	Control	1.746
	SRR6706287	Light intensity 50%	2.497
	SRR6706288	Light intensity 20%	2.870
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.264
	CNS0095593	Slightly white alabastrum(diploid) 2	20.877
	CNS0095594	Slightly white alabastrum(diploid) 3	24.915
	CNS0095595	Whole white alabastrum(diploid) 2	18.603
	CNS0095596	Whole white alabastrum(diploid) 3	12.239
	CNS0095597	Whole white alabastrum(diploid) 4	11.422
	CNS0095598	Silvery flower (diploied) 1	18.626
	CNS0095599	Silvery flower (diploied) 2	17.869
	CNS0095600	Silvery flower (diploied) 3	3.420
	CNS0095601	Golden flower (diploid) 1	15.725
	CNS0095602	Golden flower (diploid) 2	6.816
	CNS0095603	Golden flower (diploid) 3	5.639
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.687
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.603
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.600
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.511
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.269
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.526
	CNS0095610	Silvery flower (tetraploid) 1	7.756
	CNS0095611	Silvery flower (tetraploid) 2	3.844
	CNS0095612	Silvery flower (tetraploid) 3	4.836
	CNS0095613	Golden flower (tetraploid) 1	2.936
	CNS0095614	Golden flower (tetraploid) 2	4.433
	CNS0095615	Golden flower (tetraploid) 3	1.220
CRA001975	CRR073297	Stem 1	8.208
	CRR073298	Stem 2	9.065
	CRR073299	Stem 3	0.831
	CRR073300	Leaf 1	8.415
	CRR073301	Leaf 2	6.650
	CRR073302	Leaf 3	0.978
	CRR073303	Juvenile bud 1	0.986
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.641
	CRR073306	Third green 1	0.613
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.004
	CRR073309	Second white 1	0.231
	CRR073310	Second white 2	0.273
	CRR073311	Second white 3	0.131
	CRR073312	Silver flowering 1	0.088
	CRR073313	Silver flowering 2	0.013
	CRR073314	Silver flowering 3	0.315
	CRR073315	Gold flowering 1	1.223
	CRR073316	Gold flowering 2	1.471
	CRR073317	Gold flowering 3	0.214
	CRR073318	Tawny withering 1	1.543
	CRR073319	Tawny withering 2	6.495
	CRR073320	Tawny withering 3	3.199