Gene detail

Detail information of GWHGAAZE014709

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU44539.1	0	hypothetical protein MIMGU_mgv1a008933mg [Erythranthe guttata]
Swissprot	tr\|P19446\|MDHG_CITLA	0	Malate dehydrogenase, glyoxysomal (Precursor)
trEMBL	tr\|A0A022RWV0\|A0A022RWV0_ERYGU	0	Malate dehydrogenase {ECO:0000256\|RuleBase:RU003405}
TAIR10	AT2G22780.1	4E-177	peroxisomal NAD-malate dehydrogenase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	17052805	17056714	+
GWHAAZE00000004	mRNA	17052805	17056714	+
GWHAAZE00000004	exon	17052805	17053076	+
GWHAAZE00000004	exon	17053680	17053895	+
GWHAAZE00000004	exon	17054805	17055119	+
GWHAAZE00000004	exon	17055311	17055400	+
GWHAAZE00000004	exon	17055510	17055593	+
GWHAAZE00000004	exon	17055775	17055810	+
GWHAAZE00000004	exon	17055909	17055998	+
GWHAAZE00000004	exon	17056135	17056229	+
GWHAAZE00000004	exon	17056642	17056714	+
GWHAAZE00000004	five_prime_UTR	17052805	17053004	+
GWHAAZE00000004	CDS	17053005	17053076	+
GWHAAZE00000004	CDS	17053680	17053895	+
GWHAAZE00000004	CDS	17054805	17055119	+
GWHAAZE00000004	CDS	17055311	17055400	+
GWHAAZE00000004	CDS	17055510	17055593	+
GWHAAZE00000004	CDS	17055775	17055810	+
GWHAAZE00000004	CDS	17055909	17055998	+
GWHAAZE00000004	CDS	17056135	17056229	+
GWHAAZE00000004	CDS	17056642	17056714	+

Transcript Sequence
>GWHTAAZE014723 TTCGAAGAAATCTTTTCTTTGTCCGTTACGAACGTAGGATAAGAACCGAAAATAAATTTTCACGCTTCCCAATTCAAGCTCTTGCGCCATCTAATCTTCACCCCTGTACACACCATTATATAAATACCCTCACAATCGCTTGACAACAATTCAATTTCAATTATATTTCATTCAACTTTCGTGATCTTCGTTAAAGAAATATGAATTCCAATGCAGATGTTAATCAACGCATTGCCAGAATATCGGCTCACATCAACCCCCCTAATCTCCAGATGGAGGGGGGTTCGGGATTGAAGCAAGTGAGTTGCCGGGCAAAAGGTGGATCAAGTGGATTTAAAGTCGCAGTATTGGGAGCAGCAGGAGGCATAGGGCAACCTCTTGCTATGCTGATGAAAATGAATCCTTTGGTGTCGGTTCTTCATCTCTATGATGTCGTAAACTCCCCTGGTGTTACTGCAGATATCAGTCATATGGACACCGGTGCTGTGGTGCGTGGTTTTCTAGGGCAGCAACAATTAGAGGATGCTCTCACTGGCATGGACCTTGTAATAATTCCTGCTGGTGTTCCTAGGAAACCTGGAATGACGAGGGATGATCTGTTCAACATAAATGCAGGAATTGTTAAGACCCTCTGTGAAGGAATTGCTAAATGCTGTCCCAAGGCTATCATTAATGTGATCAGCAATCCTGTGAACTCTACAGTTCCTATTGCAGCAGAGGTTTTCAAAAAAGCAGGCACCTATGATTCCAGGCGACTTTTAGGAGTTACCATGCTCGATGTTGTTCGAGCTAATACTTTTGTGGCTGAAGTTTTGGGGCTTGACCCTAGGGAGGTTGAAGTTCCAGTTGTAGGTGGTCATGCTGGGGTTACGATTTTACCTCTTCTGTCTCAGATTAAACCACCATGCTCTTTTACCTCAGAGGAGACTGACTATCTGACATCTCGTATTCAGAATGGAGGAACTGAAGTTGTTGAGGCGAAAGCTGGTGCAGGATCTGCAACTCTTTCAATGGCATATGCTGCTGTTAAATTTGCAGATGCGTGTTTGAGGGGATTGAGAGGAGATGCCAGCATTGTTGAATGTGCTTTTGTACCTTCTCAGGTGACTGAACTTCCTTTCTTTGCATCAAAGGTACGGCTTGGCCGTAATGGAGTTGAGGAGATATATCCACTAGGCCCCTTGAACGAATATGAGAGGGTTGGCTTGGAGAAGGCGAAGAAAGATTTGGGGTCAAGCATTGATAAGGGGATTTCCTTTGTTAGAAAATGA

Network for GWHGAAZE014709

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0086

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00056.24	Ldh_1_N	46	188	1.50E-47
PF02866.19	Ldh_1_C	190	354	1.00E-48

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00026	MDH2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Citrate cycle	map00020
		Pyruvate metabolism	map00620
		Glyoxylate and dicarboxylate metabolism	map00630
		Carbon fixation in photosynthetic organisms	map00710
		Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0006099	biological_process	tricarboxylic acid cycle
GO:0055114	biological_process	oxidation-reduction process
GO:0006108	biological_process	malate metabolic process
GO:0005975	biological_process	carbohydrate metabolic process
GO:0019752	biological_process	carboxylic acid metabolic process
GO:0030060	molecular_function	L-malate dehydrogenase activity
GO:0016491	molecular_function	oxidoreductase activity
GO:0016616	molecular_function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0016615	molecular_function	malate dehydrogenase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	32.136
	SRR3591706	second leaf	20.385
	SRR3591707	mature leaf	22.400
	SRR3591708	Shoot apex	23.027
	SRR3591709	Stem	31.548
	SRR3591710	White floral bud	32.122
	SRR3591711	White flower	42.462
	SRR3591712	Green floral bud	39.595
	SRR3591713	Yellow flower	52.019
SRP173429	SRR8316895	Juvenile bud stage	22.525
	SRR8316896	Juvenile bud stage	33.825
	SRR8316897	Juvenile bud stage	16.226
	SRR8316894	Third green stage	15.029
	SRR8316900	Third green stage	55.394
	SRR8316901	Third green stage	44.722
	SRR8316898	Complete white stage	18.200
	SRR8316899	Complete white stage	45.741
	SRR8316903	Complete white stage	25.372
	SRR8316902	Silver flowering stage	15.601
	SRR8316904	Silver flowering stage	22.648
	SRR8316905	Silver flowering stage	12.090
	SRR8316906	Gold flowering stage	36.292
	SRR8316907	Gold flowering stage	36.290
	SRR8316908	Gold flowering stage	33.092
SRP132670	SRR6706286	Control	58.827
	SRR6706287	Light intensity 50%	58.030
	SRR6706288	Light intensity 20%	64.180
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	26.238
	CNS0095593	Slightly white alabastrum(diploid) 2	26.358
	CNS0095594	Slightly white alabastrum(diploid) 3	22.534
	CNS0095595	Whole white alabastrum(diploid) 2	23.161
	CNS0095596	Whole white alabastrum(diploid) 3	31.089
	CNS0095597	Whole white alabastrum(diploid) 4	24.859
	CNS0095598	Silvery flower (diploied) 1	25.465
	CNS0095599	Silvery flower (diploied) 2	26.799
	CNS0095600	Silvery flower (diploied) 3	41.643
	CNS0095601	Golden flower (diploid) 1	31.147
	CNS0095602	Golden flower (diploid) 2	37.340
	CNS0095603	Golden flower (diploid) 3	39.509
	CNS0095604	Slightly white alabastrum(tetraploid) 1	33.884
	CNS0095605	Slightly white alabastrum(tetraploid) 2	29.496
	CNS0095606	Slightly white alabastrum(tetraploid) 3	34.735
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.643
	CNS0095608	Whole white alabastrum(tetraploid) 2	31.091
	CNS0095609	Whole white alabastrum(tetraploid) 3	46.412
	CNS0095610	Silvery flower (tetraploid) 1	45.167
	CNS0095611	Silvery flower (tetraploid) 2	52.116
	CNS0095612	Silvery flower (tetraploid) 3	40.630
	CNS0095613	Golden flower (tetraploid) 1	33.650
	CNS0095614	Golden flower (tetraploid) 2	43.410
	CNS0095615	Golden flower (tetraploid) 3	37.546
CRA001975	CRR073297	Stem 1	37.904
	CRR073298	Stem 2	31.166
	CRR073299	Stem 3	36.700
	CRR073300	Leaf 1	33.017
	CRR073301	Leaf 2	34.833
	CRR073302	Leaf 3	44.219
	CRR073303	Juvenile bud 1	40.991
	CRR073304	Juvenile bud 2	37.555
	CRR073305	Juvenile bud 3	42.200
	CRR073306	Third green 1	20.891
	CRR073307	Third green 2	21.386
	CRR073308	Third green 3	17.148
	CRR073309	Second white 1	33.169
	CRR073310	Second white 2	20.906
	CRR073311	Second white 3	21.475
	CRR073312	Silver flowering 1	22.534
	CRR073313	Silver flowering 2	20.032
	CRR073314	Silver flowering 3	16.821
	CRR073315	Gold flowering 1	12.085
	CRR073316	Gold flowering 2	14.024
	CRR073317	Gold flowering 3	14.238
	CRR073318	Tawny withering 1	27.187
	CRR073319	Tawny withering 2	23.523
	CRR073320	Tawny withering 3	22.854