Gene detail

Detail information of GWHGAAZE014710

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009771232.1	PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Nicotiana sylvestris]
Swissprot	tr\|O49545\|BAME1_ARATH	Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 (Precursor)
trEMBL	tr\|A0A068U299\|A0A068U299_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02660.1}
TAIR10	AT5G65700.2	Leucine-rich receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	17087119	17091335	-
GWHAAZE00000004	mRNA	17087119	17091335	-
GWHAAZE00000004	exon	17088743	17091335	-
GWHAAZE00000004	exon	17087119	17087910	-
GWHAAZE00000004	CDS	17088743	17091335	-
GWHAAZE00000004	CDS	17087444	17087910	-
GWHAAZE00000004	three_prime_UTR	17087119	17087443	-

Transcript Sequence
>GWHTAAZE014724 ATGCTATACCTTCTTCTCCTTCTCTTCTTTCTTCACATCCATGTCCGCCACTCCACCGCAGCTATACCGGCGCGAATTCCCGAATTCCGAGCTCTCCTTTCCGTAAAATCATCAATCACCGACGATCCACAGTCCTCCCTTTCCACCTGGAATATCTCCACCAGCCACTGCACCTGGTCCGGCGTCACGTGCGATGCCTACCGTCACGTGACCTCCTTAGACATCTCCTCCCTCAACCTCTCCGGCACTCTCTCTCCGGACATTGGCCAGCTTCGCTACCTCCTCAAACTCACCGTTGCCGCCAACCAGATCTCCGGCCGTATTCCGCCGGAGATCTCTCAAATCTCTGGCCTCCGGCTCCTCAATCTCTCTAACAACATCTTCAATGAAACCTTTCCTCCGCAACTCTCAAGCCTCAAGTACCTCCGAGTACTCGACATCTATAACAACAACATGACCGGTGACCTCCCCGCCGGCGTCTATCAAATGACGAACCTCCGTCACCTTCACCTCGGCGGCAACTTCTTCGGCGGCGTTATTCCTCCGGATTACGGTCGGTTTCCTCTCCTTGAATACCTTGCAGTTTCCGGTAACGAGCTTGTCGGTGCTGTTCCGCCGGAACTAGGTAACATATCTACTCTTAAAGAGCTCTATATTGGATACTTCAACAGCTATGCCGGCGGCATTCCGCCGCAGATCGGTAACTTATCCCGACTCCTCCGATTCGACGCCGCGGACTGCGGCCTCTCAGGTGCGGTTCCACCGGAGCTAGGCAAACTTCAGAACATGGACACTCTGTTTCTACAGGTGAACGGACTGGCCGGACCTTTGACGAATGAGCTAGGTAGCTTGAAGAGTTTAAAATCTATGGATCTATCAAACAACATTTTCACCGGCGAAATACCGGAGTCATTTTCCATGCTTAAGAATCTGACGCTACTGAATCTGTTTAGAAACAAGCTTCACGGTTCAATACCGGACTTTATTGCTGAATTGCCGCAGCTAGAGGTGTTGCAGCTGTGGGAAAACAACTTCACTGGAAGTATTCCGCAAAAATTAGGGCTAAACGGAAAGCTTCAGCTCCTAGATCTATCCTCGAACAAATTGACCGGAAATCTGCCGCCATACATGTGTACTGGTAATAAACTTGAAACACTCATCACTTTAGGCAACTTTTTGTTCGGTCCTATTCCTGAATCACTTGGCCAGTGTGAATCATTGAGTAGGATTAGAATGGGAGAGAATTATCTCAATGGCTCAATCCCCAAGGGGCTTTTGAGTTTGCCGGAGCTCACGCAGGTTGAACTTCAAGACAATCTCCTCTCCGGTGGTTTTCCGGAGACTAATTCAATATCTGCGACTCTGGGACAGATAAGTCTTTCGAATAATGAGCTCACCGGCTCGTTACCACCAACTATCGGTAACTTCTCTGGCATCCAGAAGCTACTGCTTGATGGAAACAAGTTCTCAGGATTGATTCCACCACAAATCGGCAAGTTACAACAGCTGTCTAAGATAGATTTCAGTCACAACAATTTCTCCGGCGAGATTGCACCGGAAATCAGCCAGTGCAAGCTTTTGACCTTTGTTGATCTCAGTCGGAACCAGCTTTACGGCGAGATACCCACTGAGATTACAGGAATGCGAATACTGAACTATTTGAATCTGTCGCGGAATCATTTAGTAGGGAGCATTCCGGCACCAATAGCTTCAATGCAGAGCTTAACATCTGTTGATTTTTCGTATAATAATCTTTCTGGTTTAATTCCTGCTACCGGTCAGTTCAGTTACTTCAATTACACTTCCTTTCTCGGCAACCCTGAGCTTTGTGGCCCTTATTTAGGACCTTGCAAAGATGGAATTGCTGATGCCACTCATAAACCACATGTGAAAGGGTCACTCTCTGCTTCGGTGAAGCTGTTACTTGTCATTGGATTGCTGTTGTGCTCAATTGCATTTGCCGTTGCAGCTATCATTAAGGCTCGATCGTTAAAGAAGGCAAGCGAGGCTCGCGCTTGGAAGCTTACAGCTTTCCAACGCTTGGATTTCAGTTGTGATGATGTTCTTGATAGCTTAAAAGAGGACAATATTATAGGAAAAGGAGGTGCTGGTATTGTTTACAAGGGAGTGATGCCTAATGGTGAACATGTCGCAGTGAAAAGATTGCCGGTAATGAGCCGTGGTTCTTCACACGACCATGGATTCAATGCAGAAATACAGACGTTAGGGAGGATTCGGCATAGGCACATTGTTAGGTTATTAGGATTCTGTTCCAACCATGAAACTAATCTTTTGGTTTATGAGTACATGCCTAATGGGAGCTTGGGGGAAATGCTTCATGGTAAGAAAGGGGGTCATTTGGTATGGGATACAAGGTATCAGATTGCGGTGGAGTCCGCAAAGGGCCTTTGCTATCTCCATCATGATTGCTCACCGCTAATTCTTCACAGAGACGTGAAATCGAACAACATCCTTTTGGACTCCAACTTTGAAGCTCATGTAGCTGATTTTGGCCTTGCCAAGTTCTTGCAGGATTCGGGTACCTCAGAGTGCATGTCTGCTATTGCTGGTTCTTATGGATATATTGCCCCAGAATACGCTTACACACTCAAGGTTGACGAGAAGAGCGATGTTTACAGCTTCGGTGTAGTTCTGTTAGAACTAGTAACTGGCCGAAAACCGGTCGGGGAGTTTGGGGATGGAGTCGACATAGTCCAATGGGTGAGAAAGATGACGGATGGGAACAAAGAACGAGTGCTTAAAATCTTGGATCCAAGACTACCCACAGTTCCCCTCCACGAGGTGATGCACGTATTCTACGTTGCCATGCTTTGCGTAGAAGAGCAGGCTGTTGAACGGCCCACAATGCGTGAAGTTGTTCAAATGTTGACGGAGCTTCCAAAGCCACCGAATTCGAAACCGGTCGACTCAATTGTCAGTGATTCCCCACCTCCTCCACCAGCCTCGGGTTTAGAGTCTCCAATTATAGCAGCTGATACTAAGGACCTTCATCAGCCACTGCCTCAATCGCCTCCACCACCTGACCTTCTTAGCATATGATGGAGGATGGTGGTGGTTTGTGGTAGAGTGGGGAGTCTTTTGCAGCAGATATCTCAGTGAATTGGGTTAGGTTTGTTTTTTTGTGTTCTATTTTCCCATCCTTCTCTTCTTTTGTTGGATTAATGATTGTAAGGTTTTTTTTTGTTTTTTTTTTTAAATGTTGTTACTTGATGTACAGTAGGATTGGTCGGGATTTTTGTTATATAAAGTTGGTCAAGGGTATTATCATGTACTGTTGCTCTTCTTGTTTAGTGTCTTAAGTTTGTTTAGATCACTTTCACATTTTCTCAGAAGGAAGGAAGAAAGAAAGGGAAAGTGGTGGAAG

Network for GWHGAAZE014710

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	28	65	2.40E-11
PF13855.7	LRR_8	117	174	1.30E-06
PF00560.34	LRR_1	286	306	0.25
PF00069.26	Pkinase	694	961	9.30E-46

Protein Sequence

>GWHPAAZE014717
MLYLLLLLFFLHIHVRHSTAAIPARIPEFRALLSVKSSITDDPQSSLSTWNISTSHCTWSGVTCDAYRHVTSLDISSLNLSGTLSPDIGQLRYLLKLTVAANQISGRIPPEISQISGLRLLNLSNNIFNETFPPQLSSLKYLRVLDIYNNNMTGDLPAGVYQMTNLRHLHLGGNFFGGVIPPDYGRFPLLEYLAVSGNELVGAVPPELGNISTLKELYIGYFNSYAGGIPPQIGNLSRLLRFDAADCGLSGAVPPELGKLQNMDTLFLQVNGLAGPLTNELGSLKSLKSMDLSNNIFTGEIPESFSMLKNLTLLNLFRNKLHGSIPDFIAELPQLEVLQLWENNFTGSIPQKLGLNGKLQLLDLSSNKLTGNLPPYMCTGNKLETLITLGNFLFGPIPESLGQCESLSRIRMGENYLNGSIPKGLLSLPELTQVELQDNLLSGGFPETNSISATLGQISLSNNELTGSLPPTIGNFSGIQKLLLDGNKFSGLIPPQIGKLQQLSKIDFSHNNFSGEIAPEISQCKLLTFVDLSRNQLYGEIPTEITGMRILNYLNLSRNHLVGSIPAPIASMQSLTSVDFSYNNLSGLIPATGQFSYFNYTSFLGNPELCGPYLGPCKDGIADATHKPHVKGSLSASVKLLLVIGLLLCSIAFAVAAIIKARSLKKASEARAWKLTAFQRLDFSCDDVLDSLKEDNIIGKGGAGIVYKGVMPNGEHVAVKRLPVMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEMLHGKKGGHLVWDTRYQIAVESAKGLCYLHHDCSPLILHRDVKSNNILLDSNFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVTGRKPVGEFGDGVDIVQWVRKMTDGNKERVLKILDPRLPTVPLHEVMHVFYVAMLCVEEQAVERPTMREVVQMLTELPKPPNSKPVDSIVSDSPPPPPASGLESPIIAADTKDLHQPLPQSPPPPDLLSI

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	34.525
	SRR3591706	second leaf	40.717
	SRR3591707	mature leaf	28.321
	SRR3591708	Shoot apex	37.475
	SRR3591709	Stem	35.938
	SRR3591710	White floral bud	35.676
	SRR3591711	White flower	29.525
	SRR3591712	Green floral bud	54.744
	SRR3591713	Yellow flower	7.165
SRP173429	SRR8316895	Juvenile bud stage	16.060
	SRR8316896	Juvenile bud stage	14.199
	SRR8316897	Juvenile bud stage	6.921
	SRR8316894	Third green stage	12.734
	SRR8316900	Third green stage	27.419
	SRR8316901	Third green stage	22.471
	SRR8316898	Complete white stage	3.007
	SRR8316899	Complete white stage	25.488
	SRR8316903	Complete white stage	9.308
	SRR8316902	Silver flowering stage	0.643
	SRR8316904	Silver flowering stage	1.781
	SRR8316905	Silver flowering stage	0.566
	SRR8316906	Gold flowering stage	0.955
	SRR8316907	Gold flowering stage	1.414
	SRR8316908	Gold flowering stage	2.569
SRP132670	SRR6706286	Control	35.194
	SRR6706287	Light intensity 50%	40.389
	SRR6706288	Light intensity 20%	46.832
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.261
	CNS0095593	Slightly white alabastrum(diploid) 2	22.201
	CNS0095594	Slightly white alabastrum(diploid) 3	13.032
	CNS0095595	Whole white alabastrum(diploid) 2	18.695
	CNS0095596	Whole white alabastrum(diploid) 3	21.522
	CNS0095597	Whole white alabastrum(diploid) 4	17.237
	CNS0095598	Silvery flower (diploied) 1	24.559
	CNS0095599	Silvery flower (diploied) 2	12.611
	CNS0095600	Silvery flower (diploied) 3	12.503
	CNS0095601	Golden flower (diploid) 1	14.450
	CNS0095602	Golden flower (diploid) 2	16.260
	CNS0095603	Golden flower (diploid) 3	13.971
	CNS0095604	Slightly white alabastrum(tetraploid) 1	33.300
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.853
	CNS0095606	Slightly white alabastrum(tetraploid) 3	70.344
	CNS0095607	Whole white alabastrum(tetraploid) 1	22.045
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.849
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.003
	CNS0095610	Silvery flower (tetraploid) 1	8.638
	CNS0095611	Silvery flower (tetraploid) 2	14.591
	CNS0095612	Silvery flower (tetraploid) 3	7.810
	CNS0095613	Golden flower (tetraploid) 1	0.843
	CNS0095614	Golden flower (tetraploid) 2	6.751
	CNS0095615	Golden flower (tetraploid) 3	2.054
CRA001975	CRR073297	Stem 1	61.705
	CRR073298	Stem 2	56.901
	CRR073299	Stem 3	58.984
	CRR073300	Leaf 1	64.800
	CRR073301	Leaf 2	63.400
	CRR073302	Leaf 3	43.122
	CRR073303	Juvenile bud 1	56.658
	CRR073304	Juvenile bud 2	26.693
	CRR073305	Juvenile bud 3	80.816
	CRR073306	Third green 1	3.127
	CRR073307	Third green 2	5.608
	CRR073308	Third green 3	7.969
	CRR073309	Second white 1	1.868
	CRR073310	Second white 2	0.671
	CRR073311	Second white 3	1.430
	CRR073312	Silver flowering 1	1.587
	CRR073313	Silver flowering 2	2.413
	CRR073314	Silver flowering 3	2.221
	CRR073315	Gold flowering 1	17.991
	CRR073316	Gold flowering 2	22.745
	CRR073317	Gold flowering 3	24.920
	CRR073318	Tawny withering 1	94.959
	CRR073319	Tawny withering 2	46.057
	CRR073320	Tawny withering 3	105.917