Gene detail

Detail information of GWHGAAZE014719

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011073652.1	5.3373E-132	PREDICTED: transcription factor bHLH18-like [Sesamum indicum]
Swissprot	tr\|Q9T072\|BH025_ARATH	7E-64	Transcription factor bHLH25
trEMBL	tr\|A0A068V9N7\|A0A068V9N7_COFCA	7E-119	Coffea canephora DH200=94 genomic scaffold, scaffold_148 {ECO:0000313\|EMBL:CDP17179.1}
TAIR10	AT4G37850.1	1E-53	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	17362144	17363725	-
GWHAAZE00000004	mRNA	17362144	17363725	-
GWHAAZE00000004	exon	17362144	17362361	-
GWHAAZE00000004	exon	17362475	17362852	-
GWHAAZE00000004	exon	17363120	17363496	-
GWHAAZE00000004	exon	17363587	17363725	-
GWHAAZE00000004	CDS	17363587	17363725	-
GWHAAZE00000004	CDS	17363120	17363496	-
GWHAAZE00000004	CDS	17362475	17362852	-
GWHAAZE00000004	CDS	17362287	17362361	-
GWHAAZE00000004	three_prime_UTR	17362144	17362286	-

Transcript Sequence
>GWHTAAZE014733 ATGGACGATCTGATGTTCATGGATCAATGCGAGATAATGGACTCCTTCGACGAAGATTTAGCCGCTGCACTCGGAGAGGATTTTCAGAACTCTCTCTCCTCCGAAAGCAACTCTTCATCTTCCACTTTGATTCCAAGAAAAAGACCTAGCAAACAACACAAGCCTAATAATTACAACAATTGCACCACCAACAACGTCCCAAATTTTGACCAGTCTAATTCTTCCATTCCGATTATCTTGAATTTTGGTAACAACTCAAGTCAACCAGAACACACTCAACAAGGACCTGTAGGAGGGGCTATGAATCACGAGGATGAGGTGGATGCTTTGATTTCTCAAGGTGCATTTGCTAACCGTGATGATGTGGCAAAAACGAGCCAGGCGACCAAGAAGACCAACGCACGTACTAGGCCTCCCTCTCAGACTTATGATCATATTATAGCTGAGAGGAAGCGGCGTGAACAACTCAGCCAGCGGTTTGTTGCTCTTTCAGCCATTGTTCCTGGCCTCAAGAAGATGGATAAGACTTCTGTTCTCGGTGATGCAATTAAGTACTTGAAACAACTCCAAGAGAGAGTGAAGATACTAGAGGAACAAGCCACAAAGCAAACCATGGAATCAGTGGTACTTGTTAAGAAATCACAGCTCTTAATCGAAGACGAGGGTTCCTCCGACGAGAATCCTGTTGACGGCGGTGGCAGCCCTGACGAGCCACTACCGGAAATCGAGGCAAGAGTATGCGATAAGAGCATTCTTATAAGAATCCACTGCGAGAAACACAAAGGAGTGCTCGTGAAAATACTTTCAGAAACAGAGAAAATGAATCTGGCTATTGTCAACACTAGCGTCGCCCCATTCGGAACTTTAGCTCTTGATATTACCATTATTGCCGAGATGGAAAAAGAATTCAACATGACATTGAATGATGTCGTTAGAAGTCTTCGTTCAGCAGTGCAACGTGTGACCTGAATAAAAAATTGGCAAGGAAAGTGTTTTCCATGCATCAAAACACTGGGATCGACTTTTTGATTTACGTGCGAAATGTAAAAATAATAAATAAGATCTAGTGAGGGGTTGGCGAACTAGTCGGGCCAAAAGGAAGAAAAGGCGGA

Network for GWHGAAZE014719

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0264

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.27	HLH	145	190	2.10E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.555
	SRR3591706	second leaf	84.857
	SRR3591707	mature leaf	11.665
	SRR3591708	Shoot apex	75.840
	SRR3591709	Stem	0.252
	SRR3591710	White floral bud	0.795
	SRR3591711	White flower	0.529
	SRR3591712	Green floral bud	15.661
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	34.828
	SRR8316896	Juvenile bud stage	28.513
	SRR8316897	Juvenile bud stage	13.119
	SRR8316894	Third green stage	7.618
	SRR8316900	Third green stage	5.390
	SRR8316901	Third green stage	7.007
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	2.355
	SRR8316903	Complete white stage	0.152
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	7.872
	SRR6706287	Light intensity 50%	7.537
	SRR6706288	Light intensity 20%	7.331
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.713
	CNS0095593	Slightly white alabastrum(diploid) 2	15.788
	CNS0095594	Slightly white alabastrum(diploid) 3	11.633
	CNS0095595	Whole white alabastrum(diploid) 2	19.965
	CNS0095596	Whole white alabastrum(diploid) 3	4.313
	CNS0095597	Whole white alabastrum(diploid) 4	12.283
	CNS0095598	Silvery flower (diploied) 1	2.629
	CNS0095599	Silvery flower (diploied) 2	2.715
	CNS0095600	Silvery flower (diploied) 3	0.231
	CNS0095601	Golden flower (diploid) 1	0.763
	CNS0095602	Golden flower (diploid) 2	0.124
	CNS0095603	Golden flower (diploid) 3	0.044
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.909
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.386
	CNS0095606	Slightly white alabastrum(tetraploid) 3	50.436
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.355
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.989
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.584
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.050
	CNS0095612	Silvery flower (tetraploid) 3	0.145
	CNS0095613	Golden flower (tetraploid) 1	0.043
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	39.433
	CRR073298	Stem 2	43.623
	CRR073299	Stem 3	33.081
	CRR073300	Leaf 1	11.985
	CRR073301	Leaf 2	8.672
	CRR073302	Leaf 3	5.009
	CRR073303	Juvenile bud 1	2.612
	CRR073304	Juvenile bud 2	0.089
	CRR073305	Juvenile bud 3	2.706
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.088
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	4.922
	CRR073316	Gold flowering 2	4.935
	CRR073317	Gold flowering 3	5.866
	CRR073318	Tawny withering 1	63.100
	CRR073319	Tawny withering 2	28.020
	CRR073320	Tawny withering 3	58.221