Detail information of GWHGAAZE014720


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007047667.13.3626E-131Transducin/WD40 repeat-like superfamily protein [Theobroma cacao]
Swissprottr|Q8W1K8|MUT11_CHLRE4E-53Protein Mut11
trEMBLtr|A0A061DH92|A0A061DH92_THECC1E-131Transducin/WD40 repeat-like superfamily protein {ECO:0000313|EMBL:EOX91824.1}
TAIR10AT3G49660.17E-97Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene1737896217384591-
GWHAAZE00000004mRNA1737896217384591-
GWHAAZE00000004exon1738430417384591-
GWHAAZE00000004exon1737896217379255-
GWHAAZE00000004CDS1738430417384591-
GWHAAZE00000004CDS1737896217379255-
Transcript Sequence

Network for GWHGAAZE014720

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD4019571.50E-10
PF00400.33WD40721008.50E-05
PF00400.33WD401041443.20E-05
PF00400.33WD401501883.10E-05
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf13.197
SRR3591706second leaf8.913
SRR3591707mature leaf4.955
SRR3591708Shoot apex17.202
SRR3591709Stem11.477
SRR3591710White floral bud6.804
SRR3591711White flower8.216
SRR3591712Green floral bud10.706
SRR3591713Yellow flower4.912
SRP173429 SRR8316895Juvenile bud stage 16.572
SRR8316896Juvenile bud stage 24.988
SRR8316897Juvenile bud stage 14.341
SRR8316894Third green stage 7.195
SRR8316900Third green stage 21.469
SRR8316901Third green stage 22.887
SRR8316898Complete white stage 2.689
SRR8316899Complete white stage 16.009
SRR8316903Complete white stage 5.484
SRR8316902Silver flowering stage2.719
SRR8316904Silver flowering stage5.310
SRR8316905Silver flowering stage1.819
SRR8316906Gold flowering stage 5.452
SRR8316907Gold flowering stage 3.217
SRR8316908Gold flowering stage 7.722
SRP132670SRR6706286Control13.855
SRR6706287Light intensity 50%14.316
SRR6706288Light intensity 20%14.179
CNP0000432CNS0095592Slightly white alabastrum(diploid) 129.213
CNS0095593Slightly white alabastrum(diploid) 224.265
CNS0095594Slightly white alabastrum(diploid) 325.317
CNS0095595Whole white alabastrum(diploid) 216.141
CNS0095596Whole white alabastrum(diploid) 322.400
CNS0095597Whole white alabastrum(diploid) 418.638
CNS0095598Silvery flower (diploied) 19.025
CNS0095599Silvery flower (diploied) 212.902
CNS0095600Silvery flower (diploied) 310.392
CNS0095601Golden flower (diploid) 19.239
CNS0095602Golden flower (diploid) 28.960
CNS0095603Golden flower (diploid) 39.007
CNS0095604Slightly white alabastrum(tetraploid) 126.177
CNS0095605Slightly white alabastrum(tetraploid) 227.704
CNS0095606Slightly white alabastrum(tetraploid) 324.669
CNS0095607Whole white alabastrum(tetraploid) 117.732
CNS0095608Whole white alabastrum(tetraploid) 216.178
CNS0095609Whole white alabastrum(tetraploid) 320.671
CNS0095610Silvery flower (tetraploid) 110.914
CNS0095611Silvery flower (tetraploid) 211.561
CNS0095612Silvery flower (tetraploid) 37.292
CNS0095613Golden flower (tetraploid) 17.227
CNS0095614Golden flower (tetraploid) 27.600
CNS0095615Golden flower (tetraploid) 32.405
CRA001975CRR073297Stem 120.685
CRR073298Stem 220.195
CRR073299Stem 325.263
CRR073300Leaf 119.351
CRR073301Leaf 223.939
CRR073302Leaf 319.308
CRR073303Juvenile bud 120.824
CRR073304Juvenile bud 212.665
CRR073305Juvenile bud 320.566
CRR073306Third green 11.240
CRR073307Third green 24.241
CRR073308Third green 33.352
CRR073309Second white 17.262
CRR073310Second white 23.817
CRR073311Second white 32.624
CRR073312Silver flowering 12.400
CRR073313Silver flowering 24.317
CRR073314Silver flowering 37.044
CRR073315Gold flowering 110.844
CRR073316Gold flowering 215.845
CRR073317Gold flowering 311.138
CRR073318Tawny withering 118.357
CRR073319Tawny withering 219.852
CRR073320Tawny withering 316.895