Detail information of GWHGAAZE014721


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrNP_001290013.10probable starch synthase 4, chloroplastic/amyloplastic [Vitis vinifera]
Swissprottr|Q0WVX5|SSY4_ARATH4E-100Probable starch synthase 4, chloroplastic/amyloplastic (Precursor)
trEMBLtr|B2ZGM8|B2ZGM8_VITVI0Starch synthase V {ECO:0000313|EMBL:ACD13789.1}
TAIR10AT5G65685.12E-141UDP-Glycosyltransferase superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene1740183017420585-
GWHAAZE00000004mRNA1740183017420585-
GWHAAZE00000004exon1742045917420585-
GWHAAZE00000004exon1741954417419649-
GWHAAZE00000004exon1741817617418206-
GWHAAZE00000004exon1741802717418105-
GWHAAZE00000004exon1741776117417889-
GWHAAZE00000004exon1741701317417217-
GWHAAZE00000004exon1741646617416600-
GWHAAZE00000004exon1741558417415688-
GWHAAZE00000004exon1741535017415448-
GWHAAZE00000004exon1741375617413885-
GWHAAZE00000004exon1741356517413619-
GWHAAZE00000004exon1741335517413440-
GWHAAZE00000004exon1740762817407737-
GWHAAZE00000004exon1740722917407397-
GWHAAZE00000004exon1740483917404925-
GWHAAZE00000004exon1740438217404450-
GWHAAZE00000004exon1740302917403142-
GWHAAZE00000004exon1740267917402740-
GWHAAZE00000004exon1740240617402571-
GWHAAZE00000004exon1740183017401949-
GWHAAZE00000004CDS1742045917420585-
GWHAAZE00000004CDS1741954417419649-
GWHAAZE00000004CDS1741817617418206-
GWHAAZE00000004CDS1741802717418105-
GWHAAZE00000004CDS1741776117417889-
GWHAAZE00000004CDS1741701317417217-
GWHAAZE00000004CDS1741646617416600-
GWHAAZE00000004CDS1741558417415688-
GWHAAZE00000004CDS1741535017415448-
GWHAAZE00000004CDS1741375617413885-
GWHAAZE00000004CDS1741356517413619-
GWHAAZE00000004CDS1741335517413440-
GWHAAZE00000004CDS1740762817407737-
GWHAAZE00000004CDS1740722917407397-
GWHAAZE00000004CDS1740483917404925-
GWHAAZE00000004CDS1740438217404450-
GWHAAZE00000004CDS1740302917403142-
GWHAAZE00000004CDS1740267917402740-
GWHAAZE00000004CDS1740240617402571-
GWHAAZE00000004CDS1740183017401949-
Transcript Sequence

Network for GWHGAAZE014721

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08323.12Glyco_transf_52304471.40E-30
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00703glgA Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Starch and sucrose metabolismmap00500
Biofilm formation - Escherichia colimap02026

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf22.536
SRR3591706second leaf15.696
SRR3591707mature leaf18.702
SRR3591708Shoot apex19.977
SRR3591709Stem21.658
SRR3591710White floral bud18.423
SRR3591711White flower23.288
SRR3591712Green floral bud17.678
SRR3591713Yellow flower22.532
SRP173429 SRR8316895Juvenile bud stage 15.439
SRR8316896Juvenile bud stage 23.375
SRR8316897Juvenile bud stage 11.380
SRR8316894Third green stage 7.940
SRR8316900Third green stage 20.271
SRR8316901Third green stage 18.999
SRR8316898Complete white stage 8.958
SRR8316899Complete white stage 24.172
SRR8316903Complete white stage 12.997
SRR8316902Silver flowering stage8.946
SRR8316904Silver flowering stage11.948
SRR8316905Silver flowering stage5.850
SRR8316906Gold flowering stage 21.024
SRR8316907Gold flowering stage 17.832
SRR8316908Gold flowering stage 17.595
SRP132670SRR6706286Control12.528
SRR6706287Light intensity 50%15.616
SRR6706288Light intensity 20%16.605
CNP0000432CNS0095592Slightly white alabastrum(diploid) 115.481
CNS0095593Slightly white alabastrum(diploid) 215.550
CNS0095594Slightly white alabastrum(diploid) 317.134
CNS0095595Whole white alabastrum(diploid) 212.202
CNS0095596Whole white alabastrum(diploid) 311.958
CNS0095597Whole white alabastrum(diploid) 411.867
CNS0095598Silvery flower (diploied) 121.901
CNS0095599Silvery flower (diploied) 219.338
CNS0095600Silvery flower (diploied) 315.857
CNS0095601Golden flower (diploid) 118.984
CNS0095602Golden flower (diploid) 218.220
CNS0095603Golden flower (diploid) 317.240
CNS0095604Slightly white alabastrum(tetraploid) 117.341
CNS0095605Slightly white alabastrum(tetraploid) 214.682
CNS0095606Slightly white alabastrum(tetraploid) 322.263
CNS0095607Whole white alabastrum(tetraploid) 110.995
CNS0095608Whole white alabastrum(tetraploid) 212.411
CNS0095609Whole white alabastrum(tetraploid) 314.268
CNS0095610Silvery flower (tetraploid) 119.104
CNS0095611Silvery flower (tetraploid) 219.261
CNS0095612Silvery flower (tetraploid) 319.308
CNS0095613Golden flower (tetraploid) 113.349
CNS0095614Golden flower (tetraploid) 216.237
CNS0095615Golden flower (tetraploid) 313.683
CRA001975CRR073297Stem 124.465
CRR073298Stem 218.538
CRR073299Stem 313.900
CRR073300Leaf 120.220
CRR073301Leaf 218.282
CRR073302Leaf 313.254
CRR073303Juvenile bud 111.613
CRR073304Juvenile bud 210.213
CRR073305Juvenile bud 316.645
CRR073306Third green 16.395
CRR073307Third green 24.423
CRR073308Third green 36.154
CRR073309Second white 15.250
CRR073310Second white 26.341
CRR073311Second white 37.263
CRR073312Silver flowering 15.404
CRR073313Silver flowering 24.503
CRR073314Silver flowering 32.847
CRR073315Gold flowering 111.225
CRR073316Gold flowering 219.185
CRR073317Gold flowering 37.864
CRR073318Tawny withering 111.669
CRR073319Tawny withering 215.894
CRR073320Tawny withering 312.936