Detail information of GWHGAAZE014731


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009597687.10PREDICTED: serine hydroxymethyltransferase, mitochondrial isoform X2 [Nicotiana tomentosiformis]
Swissprottr|P50433|GLYM_SOLTU0Serine hydroxymethyltransferase, mitochondrial (Precursor)
trEMBLtr|K4BCV4|K4BCV4_SOLLC0Serine hydroxymethyltransferase {ECO:0000256|RuleBase:RU000585}
TAIR10AT4G37930.10serine transhydroxymethyltransferase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene1762157717627491-
GWHAAZE00000004mRNA1762157717627491-
GWHAAZE00000004exon1762157717621725-
GWHAAZE00000004exon1762214417622254-
GWHAAZE00000004exon1762234417622455-
GWHAAZE00000004exon1762309017623167-
GWHAAZE00000004exon1762330217623367-
GWHAAZE00000004exon1762405217624156-
GWHAAZE00000004exon1762427017624467-
GWHAAZE00000004exon1762475417624846-
GWHAAZE00000004exon1762510317625195-
GWHAAZE00000004exon1762558917625713-
GWHAAZE00000004exon1762591917625995-
GWHAAZE00000004exon1762616717626288-
GWHAAZE00000004exon1762703817627124-
GWHAAZE00000004exon1762725017627300-
GWHAAZE00000004exon1762740217627491-
GWHAAZE00000004CDS1762740217627491-
GWHAAZE00000004CDS1762725017627300-
GWHAAZE00000004CDS1762703817627124-
GWHAAZE00000004CDS1762616717626288-
GWHAAZE00000004CDS1762591917625995-
GWHAAZE00000004CDS1762558917625713-
GWHAAZE00000004CDS1762510317625195-
GWHAAZE00000004CDS1762475417624846-
GWHAAZE00000004CDS1762427017624467-
GWHAAZE00000004CDS1762405217624156-
GWHAAZE00000004CDS1762330217623367-
GWHAAZE00000004CDS1762309017623167-
GWHAAZE00000004CDS1762234417622455-
GWHAAZE00000004CDS1762214417622254-
GWHAAZE00000004CDS1762157717621725-
Transcript Sequence

Network for GWHGAAZE014731

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00464.20SHMT564531.20E-215
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00600glyA, SHMT Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Biosynthesis of amino acidsmap01230
Glyoxylate and dicarboxylate metabolismmap00630
Methane metabolismmap00680
Glycine, serine and threonine metabolismmap00260
Cyanoamino acid metabolismmap00460
One carbon pool by folatemap00670

Gene Ontology

GO term OntologyName
GO:0019264biological_processglycine biosynthetic process from serine
GO:0035999biological_processtetrahydrofolate interconversion
GO:0004372molecular_functionglycine hydroxymethyltransferase activity
GO:0030170molecular_functionpyridoxal phosphate binding
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf104.730
SRR3591706second leaf221.363
SRR3591707mature leaf612.599
SRR3591708Shoot apex68.111
SRR3591709Stem121.933
SRR3591710White floral bud29.877
SRR3591711White flower16.183
SRR3591712Green floral bud37.411
SRR3591713Yellow flower10.072
SRP173429 SRR8316895Juvenile bud stage 0.452
SRR8316896Juvenile bud stage 3.652
SRR8316897Juvenile bud stage 0.669
SRR8316894Third green stage 2.018
SRR8316900Third green stage 9.479
SRR8316901Third green stage 10.070
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.000
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.039
SRR8316904Silver flowering stage0.169
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control8.625
SRR6706287Light intensity 50%8.026
SRR6706288Light intensity 20%6.162
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.233
CNS0095593Slightly white alabastrum(diploid) 28.396
CNS0095594Slightly white alabastrum(diploid) 311.274
CNS0095595Whole white alabastrum(diploid) 216.417
CNS0095596Whole white alabastrum(diploid) 319.276
CNS0095597Whole white alabastrum(diploid) 422.266
CNS0095598Silvery flower (diploied) 10.180
CNS0095599Silvery flower (diploied) 20.838
CNS0095600Silvery flower (diploied) 30.226
CNS0095601Golden flower (diploid) 10.324
CNS0095602Golden flower (diploid) 20.422
CNS0095603Golden flower (diploid) 30.203
CNS0095604Slightly white alabastrum(tetraploid) 16.208
CNS0095605Slightly white alabastrum(tetraploid) 25.668
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 112.331
CNS0095608Whole white alabastrum(tetraploid) 214.060
CNS0095609Whole white alabastrum(tetraploid) 36.063
CNS0095610Silvery flower (tetraploid) 10.095
CNS0095611Silvery flower (tetraploid) 20.642
CNS0095612Silvery flower (tetraploid) 31.025
CNS0095613Golden flower (tetraploid) 10.085
CNS0095614Golden flower (tetraploid) 20.062
CNS0095615Golden flower (tetraploid) 30.632
CRA001975CRR073297Stem 12.036
CRR073298Stem 22.372
CRR073299Stem 31.502
CRR073300Leaf 114.745
CRR073301Leaf 28.286
CRR073302Leaf 34.346
CRR073303Juvenile bud 110.053
CRR073304Juvenile bud 25.494
CRR073305Juvenile bud 30.533
CRR073306Third green 14.155
CRR073307Third green 24.649
CRR073308Third green 34.603
CRR073309Second white 10.270
CRR073310Second white 21.427
CRR073311Second white 30.091
CRR073312Silver flowering 13.805
CRR073313Silver flowering 23.157
CRR073314Silver flowering 32.010
CRR073315Gold flowering 17.147
CRR073316Gold flowering 24.237
CRR073317Gold flowering 33.688
CRR073318Tawny withering 14.041
CRR073319Tawny withering 24.769
CRR073320Tawny withering 32.675