Detail information of GWHGAAZE014752


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009777779.10PREDICTED: ATP synthase subunit beta, mitochondrial [Nicotiana sylvestris]
Swissprottr|P17614|ATPBM_NICPL0ATP synthase subunit beta, mitochondrial (Precursor)
trEMBLtr|M1D096|M1D096_SOLTU0ATP synthase subunit beta {ECO:0000256|RuleBase:RU003553}
TAIR10AT5G08680.10ATP synthase alpha/beta family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene1806327618067529-
GWHAAZE00000004mRNA1806327618067529-
GWHAAZE00000004exon1806327618063585-
GWHAAZE00000004exon1806378818064026-
GWHAAZE00000004exon1806412318064281-
GWHAAZE00000004exon1806439818064501-
GWHAAZE00000004exon1806458818064705-
GWHAAZE00000004exon1806504018065128-
GWHAAZE00000004exon1806525118065326-
GWHAAZE00000004exon1806710718067529-
GWHAAZE00000004CDS1806710718067529-
GWHAAZE00000004CDS1806525118065326-
GWHAAZE00000004CDS1806504018065128-
GWHAAZE00000004CDS1806458818064705-
GWHAAZE00000004CDS1806439818064501-
GWHAAZE00000004CDS1806412318064281-
GWHAAZE00000004CDS1806378818064026-
GWHAAZE00000004CDS1806327618063585-
Transcript Sequence

Network for GWHGAAZE014752

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF11421.9Synthase_beta1385.10E-05
PF02874.24ATP-synt_ab_N801429.30E-18
PF00006.26ATP-synt_ab1944043.70E-55
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02133ATPeF1B, ATP5B, ATP2 Metabolic pathways map01100
Oxidative phosphorylationmap00190
Thermogenesismap04714

Gene Ontology

GO term OntologyName
GO:0015986biological_processATP synthesis coupled proton transport
GO:0046034biological_processATP metabolic process
GO:1902600biological_processproton transmembrane transport
GO:0006754biological_processATP biosynthetic process
GO:0045261cellular_componentproton-transporting ATP synthase complex, catalytic core F(1)
GO:0000275cellular_componentmitochondrial proton-transporting ATP synthase complex, catalytic sector F(1)
GO:0046933molecular_functionproton-transporting ATP synthase activity, rotational mechanism
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.090
SRR3591706second leaf0.071
SRR3591707mature leaf0.144
SRR3591708Shoot apex0.309
SRR3591709Stem0.455
SRR3591710White floral bud1.724
SRR3591711White flower0.696
SRR3591712Green floral bud80.432
SRR3591713Yellow flower0.833
SRP173429 SRR8316895Juvenile bud stage 23.242
SRR8316896Juvenile bud stage 80.394
SRR8316897Juvenile bud stage 35.263
SRR8316894Third green stage 32.650
SRR8316900Third green stage 114.030
SRR8316901Third green stage 116.721
SRR8316898Complete white stage 0.357
SRR8316899Complete white stage 1.629
SRR8316903Complete white stage 0.710
SRR8316902Silver flowering stage0.053
SRR8316904Silver flowering stage0.266
SRR8316905Silver flowering stage0.300
SRR8316906Gold flowering stage 0.260
SRR8316907Gold flowering stage 0.370
SRR8316908Gold flowering stage 0.621
SRP132670SRR6706286Control45.153
SRR6706287Light intensity 50%43.890
SRR6706288Light intensity 20%34.967
CNP0000432CNS0095592Slightly white alabastrum(diploid) 143.258
CNS0095593Slightly white alabastrum(diploid) 228.243
CNS0095594Slightly white alabastrum(diploid) 358.410
CNS0095595Whole white alabastrum(diploid) 244.036
CNS0095596Whole white alabastrum(diploid) 361.933
CNS0095597Whole white alabastrum(diploid) 443.462
CNS0095598Silvery flower (diploied) 10.203
CNS0095599Silvery flower (diploied) 21.466
CNS0095600Silvery flower (diploied) 31.388
CNS0095601Golden flower (diploid) 10.970
CNS0095602Golden flower (diploid) 20.513
CNS0095603Golden flower (diploid) 30.438
CNS0095604Slightly white alabastrum(tetraploid) 1113.265
CNS0095605Slightly white alabastrum(tetraploid) 285.219
CNS0095606Slightly white alabastrum(tetraploid) 30.529
CNS0095607Whole white alabastrum(tetraploid) 192.859
CNS0095608Whole white alabastrum(tetraploid) 289.703
CNS0095609Whole white alabastrum(tetraploid) 3112.880
CNS0095610Silvery flower (tetraploid) 10.484
CNS0095611Silvery flower (tetraploid) 20.272
CNS0095612Silvery flower (tetraploid) 30.922
CNS0095613Golden flower (tetraploid) 10.136
CNS0095614Golden flower (tetraploid) 20.127
CNS0095615Golden flower (tetraploid) 30.224
CRA001975CRR073297Stem 132.905
CRR073298Stem 239.819
CRR073299Stem 325.137
CRR073300Leaf 147.095
CRR073301Leaf 257.357
CRR073302Leaf 344.169
CRR073303Juvenile bud 126.650
CRR073304Juvenile bud 215.832
CRR073305Juvenile bud 33.162
CRR073306Third green 11.885
CRR073307Third green 23.054
CRR073308Third green 31.789
CRR073309Second white 10.186
CRR073310Second white 20.370
CRR073311Second white 30.565
CRR073312Silver flowering 11.553
CRR073313Silver flowering 22.329
CRR073314Silver flowering 31.813
CRR073315Gold flowering 16.504
CRR073316Gold flowering 28.064
CRR073317Gold flowering 35.223
CRR073318Tawny withering 12.228
CRR073319Tawny withering 24.351
CRR073320Tawny withering 31.615