Gene detail

Detail information of GWHGAAZE014779

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011099536.1	2.48341E-91	PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X5 [Sesamum indicum]
Swissprot	tr\|P0C5E2\|Y1839_ARATH	1E-58	Probable serine/threonine-protein kinase At1g18390 (Precursor)
trEMBL	tr\|A0A068U2P2\|A0A068U2P2_COFCA	3E-91	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02756.1}
TAIR10	AT1G66880.1	4E-58	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	18801807	18802651	+
GWHAAZE00000004	mRNA	18801807	18802651	+
GWHAAZE00000004	exon	18801807	18802303	+
GWHAAZE00000004	exon	18802372	18802651	+
GWHAAZE00000004	CDS	18801807	18802303	+
GWHAAZE00000004	CDS	18802372	18802651	+

Transcript Sequence
>GWHTAAZE014793 ATGGGTGCACATCAAAACGTAGCCGGGAACTCCTCCTCGTCTATGAATACATTCCCAACGGAACGGTGGCCGATCATCTACGGAAACCGAGCAAAGTCTGGTTTGCTTTCTTGGCCAGTTCGGTTAAACATCGCCATAGAAACCGCTGAGGCCCTTGCTTTCCTCCACCAATCAGATATTATTCACCGTGATGTTAAAACCAACAATATTCTCTTAGACAACAGTTTTTGCGTAAAAGTAGCCGATTTTGGGTTATCAAGATTGTTCCCAAACGACACTACCCATGTTTCAACTGCTCCCCAAGGGACACCTGGATACGTGGACCCCGAGTACTACCAATGCTACCAACTCACCACCAAGAGTGATGTTTACAGCTTCGGTGTAGTGTTGGTAGAACTTATCTCGTCGTTACAAGCTGTTGACACCAATAGGCACCGGCACTATATTAATTTGGCGAATATGGCTATTAACAAAATTCAGAGCCGTATGTTGAACGAAGTTGGCTTTTCAGTGTTTGCAGCAAGAGAAGGATTTGAGACCTTCAATGAAAGAAGTATTGGATACTTTGAGGGTATTGGGAATGAAGAGTTGAATGCTCAAAAGGCGGTGGTGATAGATATTGCGGTGGATGATGGGGTGCTCAAAAAGGGCGGTAACGCATCTCAGCCTGTGCCTAATGGGGTGCTCTCAAAGGACGGCAATGAATCCCCTCATTCACCAGATTCGGTGGTTTCTGCTAAATGGGTTAGCGGTTCTACACTTGATTCTAGTGGATGA

Network for GWHGAAZE014779

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	43	159	2.90E-26

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_WAK_LRK10L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.016
	SRR3591706	second leaf	3.843
	SRR3591707	mature leaf	3.488
	SRR3591708	Shoot apex	4.850
	SRR3591709	Stem	6.083
	SRR3591710	White floral bud	5.031
	SRR3591711	White flower	3.759
	SRR3591712	Green floral bud	8.512
	SRR3591713	Yellow flower	2.096
SRP173429	SRR8316895	Juvenile bud stage	9.488
	SRR8316896	Juvenile bud stage	14.991
	SRR8316897	Juvenile bud stage	3.870
	SRR8316894	Third green stage	3.908
	SRR8316900	Third green stage	5.574
	SRR8316901	Third green stage	7.432
	SRR8316898	Complete white stage	0.946
	SRR8316899	Complete white stage	5.293
	SRR8316903	Complete white stage	1.763
	SRR8316902	Silver flowering stage	0.566
	SRR8316904	Silver flowering stage	0.945
	SRR8316905	Silver flowering stage	0.363
	SRR8316906	Gold flowering stage	1.948
	SRR8316907	Gold flowering stage	1.091
	SRR8316908	Gold flowering stage	2.116
SRP132670	SRR6706286	Control	3.900
	SRR6706287	Light intensity 50%	3.520
	SRR6706288	Light intensity 20%	4.225
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.554
	CNS0095593	Slightly white alabastrum(diploid) 2	3.859
	CNS0095594	Slightly white alabastrum(diploid) 3	11.760
	CNS0095595	Whole white alabastrum(diploid) 2	2.979
	CNS0095596	Whole white alabastrum(diploid) 3	2.903
	CNS0095597	Whole white alabastrum(diploid) 4	4.268
	CNS0095598	Silvery flower (diploied) 1	6.065
	CNS0095599	Silvery flower (diploied) 2	2.414
	CNS0095600	Silvery flower (diploied) 3	2.037
	CNS0095601	Golden flower (diploid) 1	4.086
	CNS0095602	Golden flower (diploid) 2	1.870
	CNS0095603	Golden flower (diploid) 3	1.965
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.566
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.098
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.282
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.444
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.176
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.759
	CNS0095610	Silvery flower (tetraploid) 1	1.241
	CNS0095611	Silvery flower (tetraploid) 2	0.788
	CNS0095612	Silvery flower (tetraploid) 3	1.187
	CNS0095613	Golden flower (tetraploid) 1	1.053
	CNS0095614	Golden flower (tetraploid) 2	1.790
	CNS0095615	Golden flower (tetraploid) 3	0.685
CRA001975	CRR073297	Stem 1	18.198
	CRR073298	Stem 2	14.574
	CRR073299	Stem 3	19.184
	CRR073300	Leaf 1	8.395
	CRR073301	Leaf 2	8.637
	CRR073302	Leaf 3	4.023
	CRR073303	Juvenile bud 1	5.133
	CRR073304	Juvenile bud 2	2.154
	CRR073305	Juvenile bud 3	3.551
	CRR073306	Third green 1	0.150
	CRR073307	Third green 2	0.421
	CRR073308	Third green 3	1.272
	CRR073309	Second white 1	0.260
	CRR073310	Second white 2	1.546
	CRR073311	Second white 3	0.507
	CRR073312	Silver flowering 1	1.989
	CRR073313	Silver flowering 2	1.652
	CRR073314	Silver flowering 3	1.105
	CRR073315	Gold flowering 1	2.742
	CRR073316	Gold flowering 2	2.444
	CRR073317	Gold flowering 3	2.149
	CRR073318	Tawny withering 1	3.335
	CRR073319	Tawny withering 2	6.422
	CRR073320	Tawny withering 3	3.763