Gene detail

Detail information of GWHGAAZE014788

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011099536.1	0	PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X5 [Sesamum indicum]
Swissprot	tr\|P0C5E2\|Y1839_ARATH	2E-161	Probable serine/threonine-protein kinase At1g18390 (Precursor)
trEMBL	tr\|M1CHY1\|M1CHY1_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400067835}
TAIR10	AT5G38210.1	3E-135	Protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	19028691	19033401	+
GWHAAZE00000004	mRNA	19028691	19033401	+
GWHAAZE00000004	exon	19028691	19029450	+
GWHAAZE00000004	exon	19031460	19031531	+
GWHAAZE00000004	exon	19031648	19031980	+
GWHAAZE00000004	exon	19032425	19033401	+
GWHAAZE00000004	CDS	19028691	19029450	+
GWHAAZE00000004	CDS	19031460	19031531	+
GWHAAZE00000004	CDS	19031648	19031980	+
GWHAAZE00000004	CDS	19032425	19033401	+

Transcript Sequence
>GWHTAAZE014802 ATGCCTCTCTCCCCTCTTCTCACCACCGCCCTCCTCTTCCTACTCCTATTTTCCGGCCACCTCCAGCCGTCGTCATCCCAATCGGTCACCTTTTCAAACTGCAACAACACCTTCACCTGCGGCACCCTCACCAACATCACCTACCCCTTCACCGGCGGCGATCGTCCCTCCCACTGCGGCCCACCCGACTTCCACCTCACCTGCCTCGACAACGCCACCCACTTAACCGCCGGTTCACTAACCTACCGAGTCCTCCAAATCAACCAAACCCTCCAAACCCTGACCCTAGTCCGCTTAGACCTCTACAACAACACTTGCCCCTCCCAATTCCTCAACTCCACCCTCAATCCCTCCATCTTCACCTCCGAATATGGCAATGATGATCTCACTTTGATCTACGGCTGTAATACGACGGAGATGAGGATTAGGCCACATAATTTGTTTAACTGTGATGTGAGGGGGGTTAATTTTAGTGATGCGTATTATTTGGTGGGTCCGGTTCCGAGTGACCCGATACTGAGCATTATTCGGTGTCACACTAGTGTGGCGCTTCGGGTGCTTTTGGAGGTTGGGAATAGGCTGACGGGTAATAGGACGACTTTGGGGGAGGCTTTGATGGAGGGCTTTATGGTGAATTATAGCGACCCCTATAGTAGGCAGTGTGAGAACTGCAGTGGGTTCGGTGGGCAATGTGGGTTTGATTCAAATTCGGGCCAATCCATTTGTATTTGCGACAATAATAGGGTGTGTGTTCCGCCAGCCAACAATGGCTCCAACAATGGCTCTATGGATGAACCATCAAGAAGTGGTTCTATGAACGATAGTAAAATAGTCCTTCCCGTACTAGGTGCAATACTTGCTGGCATTGGCATAGGATGGTTATTCTTCTTCTGCAGACAAAGGAGAAAACGGCTAGCTGCCCAAGCTCAAACCATGAGCAAAGACCTTCCAACTCCACCTCCTTCAAGCAAAGACCTTACTTCTACACCATCAGCTAAATTCACCAGAAGCATCCCCTCTTATCCCTCCTCAAAATCCGAGCTTGGAAAGGCGAGCACGTATTTTGGAGTTCAGGTCTTCACCTATGCTGAACTTGAAGAAGCAACTGATAATTTTGACACTTCTAGAGAACTTGGAGATGGCGGCTTTGGCACTGTGTACTATGGCAAGCTTATTGATGGCCGTGAAGTTGCAGTAAAGCGATTATATGAAAACAATTTCAAGCGCGAAGAGCAGTTCATTAATGAAGTCGAAATCCTTGCTCGATTAAACCACCAATACCTTGTTAAGTTGTATGGGTGCACATCAAAACGTAGCCGGGAACTCCTCCTCGTCTATGAATACATTCCCAACGGAACGGTGGCCGATCATCTACACGGAAACCGAGCAAAGTCTGGTTTGCTTTCTTGGCCAGTTCGGTTAAACATCGCCATAGAAACCGCTGAGGCCCTTGCTTTCCTCCACCAATCAGATATTATTCACCGTGATGTTAAAACCAACAATATTCTCTTAGACAACAGTTTTTGCGTAAAAGTAGCCGATTTTGGGTTATCAAGATTGTTCCCAAACGACACTACCCATGTTTCAACTGCTCCCCAAGGGACACCTGGATACGTGGACCCCGAGTACTACCAATGCTACCAACTCACCACCAAGAGTGATGTTTACAGCTTCGGTGTAGTGTTGGTAGAACTTATCTCGTCGTTACAAGCTGTTGACACCAATAGGCACCGGCACTATATTAATTTGGCGAATATGGCTATTAACAAAATTCAGAGCCGTATGTTGAACGAGTTAGTTGATCCGAGCCTTGGGTTCGAGTCAAACAGCTCGGTGAGGAGGATGGCTACATTGGTAGCAGAGTTGGCTTTTCAGTGTTTGCAGCAAGAGAAGGATTTGAGACCTTCAATGAAAGAAGTATTGGATACTTTGAGGGGTATTGGGAATGAAGAGTTGAATGCTCAAAAGGCGGTGGTGATAGATATTGCGGTGGATGATGGGGTGCTCAAAAAGGGCGGTAACGCATCTCAGCCTGTGCCTAATGGGGTGCTCTCAAAGGACGGCAATGAATCCCCTCATTCACCAGATTCGGTGGTTTCTGCTAAATGGGTTAGCGGTTCTACACTTGATTCTAGTGGATGA

Network for GWHGAAZE014788

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13947.7	GUB_WAK_bind	34	98	1.60E-13
PF14380.7	WAK_assoc	176	246	4.00E-14
PF00069.26	Pkinase	373	642	3.20E-49

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_WAK_LRK10L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity
GO:0030247	molecular_function	polysaccharide binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.151
	SRR3591706	second leaf	4.417
	SRR3591707	mature leaf	4.876
	SRR3591708	Shoot apex	5.621
	SRR3591709	Stem	6.546
	SRR3591710	White floral bud	6.409
	SRR3591711	White flower	6.070
	SRR3591712	Green floral bud	9.991
	SRR3591713	Yellow flower	2.943
SRP173429	SRR8316895	Juvenile bud stage	12.713
	SRR8316896	Juvenile bud stage	20.119
	SRR8316897	Juvenile bud stage	6.245
	SRR8316894	Third green stage	5.994
	SRR8316900	Third green stage	7.410
	SRR8316901	Third green stage	10.156
	SRR8316898	Complete white stage	0.771
	SRR8316899	Complete white stage	5.857
	SRR8316903	Complete white stage	2.015
	SRR8316902	Silver flowering stage	0.876
	SRR8316904	Silver flowering stage	2.173
	SRR8316905	Silver flowering stage	0.710
	SRR8316906	Gold flowering stage	4.574
	SRR8316907	Gold flowering stage	3.400
	SRR8316908	Gold flowering stage	5.747
SRP132670	SRR6706286	Control	6.511
	SRR6706287	Light intensity 50%	7.964
	SRR6706288	Light intensity 20%	7.580
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.984
	CNS0095593	Slightly white alabastrum(diploid) 2	5.016
	CNS0095594	Slightly white alabastrum(diploid) 3	14.133
	CNS0095595	Whole white alabastrum(diploid) 2	4.514
	CNS0095596	Whole white alabastrum(diploid) 3	3.348
	CNS0095597	Whole white alabastrum(diploid) 4	4.146
	CNS0095598	Silvery flower (diploied) 1	7.384
	CNS0095599	Silvery flower (diploied) 2	3.495
	CNS0095600	Silvery flower (diploied) 3	3.748
	CNS0095601	Golden flower (diploid) 1	4.535
	CNS0095602	Golden flower (diploid) 2	4.325
	CNS0095603	Golden flower (diploid) 3	4.040
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.361
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.699
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.150
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.603
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.044
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.882
	CNS0095610	Silvery flower (tetraploid) 1	2.089
	CNS0095611	Silvery flower (tetraploid) 2	1.473
	CNS0095612	Silvery flower (tetraploid) 3	2.932
	CNS0095613	Golden flower (tetraploid) 1	1.357
	CNS0095614	Golden flower (tetraploid) 2	3.167
	CNS0095615	Golden flower (tetraploid) 3	0.984
CRA001975	CRR073297	Stem 1	36.087
	CRR073298	Stem 2	29.116
	CRR073299	Stem 3	29.387
	CRR073300	Leaf 1	15.371
	CRR073301	Leaf 2	15.366
	CRR073302	Leaf 3	8.542
	CRR073303	Juvenile bud 1	8.291
	CRR073304	Juvenile bud 2	3.953
	CRR073305	Juvenile bud 3	8.078
	CRR073306	Third green 1	1.082
	CRR073307	Third green 2	1.104
	CRR073308	Third green 3	3.018
	CRR073309	Second white 1	0.667
	CRR073310	Second white 2	1.282
	CRR073311	Second white 3	0.461
	CRR073312	Silver flowering 1	3.899
	CRR073313	Silver flowering 2	4.105
	CRR073314	Silver flowering 3	1.384
	CRR073315	Gold flowering 1	4.812
	CRR073316	Gold flowering 2	3.956
	CRR073317	Gold flowering 3	5.975
	CRR073318	Tawny withering 1	6.742
	CRR073319	Tawny withering 2	10.461
	CRR073320	Tawny withering 3	5.588