Detail information of GWHGAAZE014796


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP19696.12.032E-123unnamed protein product [Coffea canephora]
Swissprottr|Q9ZNS1|RS7_AVIMR2E-11940S ribosomal protein S7
trEMBLtr|A0A068VG82|A0A068VG82_COFCA8E-124Coffea canephora DH200=94 genomic scaffold, scaffold_619 {ECO:0000313|EMBL:CDP19696.1}
TAIR10AT3G02560.22E-92Ribosomal protein S7e family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene1913489619136807-
GWHAAZE00000004mRNA1913489619136807-
GWHAAZE00000004exon1913489619135015-
GWHAAZE00000004exon1913551119135693-
GWHAAZE00000004exon1913632919136452-
GWHAAZE00000004exon1913653919136612-
GWHAAZE00000004exon1913673319136807-
GWHAAZE00000004CDS1913673319136807-
GWHAAZE00000004CDS1913653919136612-
GWHAAZE00000004CDS1913632919136452-
GWHAAZE00000004CDS1913551119135693-
GWHAAZE00000004CDS1913489619135015-
Transcript Sequence

Network for GWHGAAZE014796

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01251.19Ribosomal_S7e71871.50E-79
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02993RP-S7e, RPS7 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf295.571
SRR3591706second leaf166.916
SRR3591707mature leaf84.033
SRR3591708Shoot apex310.246
SRR3591709Stem159.320
SRR3591710White floral bud152.100
SRR3591711White flower193.341
SRR3591712Green floral bud325.370
SRR3591713Yellow flower136.398
SRP173429 SRR8316895Juvenile bud stage 149.525
SRR8316896Juvenile bud stage 206.713
SRR8316897Juvenile bud stage 124.839
SRR8316894Third green stage 103.491
SRR8316900Third green stage 333.345
SRR8316901Third green stage 300.158
SRR8316898Complete white stage 59.001
SRR8316899Complete white stage 262.791
SRR8316903Complete white stage 104.545
SRR8316902Silver flowering stage62.558
SRR8316904Silver flowering stage64.349
SRR8316905Silver flowering stage31.379
SRR8316906Gold flowering stage 112.844
SRR8316907Gold flowering stage 111.158
SRR8316908Gold flowering stage 147.741
SRP132670SRR6706286Control308.301
SRR6706287Light intensity 50%292.823
SRR6706288Light intensity 20%327.876
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1264.207
CNS0095593Slightly white alabastrum(diploid) 2291.362
CNS0095594Slightly white alabastrum(diploid) 3231.802
CNS0095595Whole white alabastrum(diploid) 2216.020
CNS0095596Whole white alabastrum(diploid) 3257.183
CNS0095597Whole white alabastrum(diploid) 4171.935
CNS0095598Silvery flower (diploied) 1128.062
CNS0095599Silvery flower (diploied) 2125.645
CNS0095600Silvery flower (diploied) 3102.041
CNS0095601Golden flower (diploid) 188.278
CNS0095602Golden flower (diploid) 289.487
CNS0095603Golden flower (diploid) 383.854
CNS0095604Slightly white alabastrum(tetraploid) 1243.687
CNS0095605Slightly white alabastrum(tetraploid) 2224.420
CNS0095606Slightly white alabastrum(tetraploid) 3270.559
CNS0095607Whole white alabastrum(tetraploid) 1127.263
CNS0095608Whole white alabastrum(tetraploid) 2118.605
CNS0095609Whole white alabastrum(tetraploid) 3222.104
CNS0095610Silvery flower (tetraploid) 196.971
CNS0095611Silvery flower (tetraploid) 287.639
CNS0095612Silvery flower (tetraploid) 359.826
CNS0095613Golden flower (tetraploid) 153.758
CNS0095614Golden flower (tetraploid) 294.278
CNS0095615Golden flower (tetraploid) 353.487
CRA001975CRR073297Stem 1223.284
CRR073298Stem 2206.613
CRR073299Stem 3248.071
CRR073300Leaf 1216.130
CRR073301Leaf 2224.130
CRR073302Leaf 3324.406
CRR073303Juvenile bud 1268.593
CRR073304Juvenile bud 2207.507
CRR073305Juvenile bud 3255.798
CRR073306Third green 129.633
CRR073307Third green 239.761
CRR073308Third green 331.482
CRR073309Second white 166.933
CRR073310Second white 254.369
CRR073311Second white 342.691
CRR073312Silver flowering 162.173
CRR073313Silver flowering 277.071
CRR073314Silver flowering 356.732
CRR073315Gold flowering 1131.314
CRR073316Gold flowering 2159.511
CRR073317Gold flowering 3138.571
CRR073318Tawny withering 1244.349
CRR073319Tawny withering 2237.930
CRR073320Tawny withering 3295.698